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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11559 and 11560 are separated by 400 nucleotides
11560 and 11561 are separated by 270 nucleotides
11561 and 11562 are separated by 1829 nucleotides
11562 and 11563 are separated by 1246 nucleotides
mRNA_3191: 11559 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 50,210 to 52,668
11559
mRNA_3192: 11560 - HMMPfam-Hypothetical protein FLILHELTA-PF10306, at 53,069 to 53,726
11560
mRNA_3193: 11561 - K13116 DDX41, ABS ATP-dependent RNA helicase DDX41, at 53,997 to 56,662
11561
mRNA_3194: 11562 - Hypothetical Protein, at 58,492 to 59,376
11562
mRNA_3195: 11563 - Hypothetical Protein, at 60,623 to 61,680
11563
Group
Condition
mRNA
_3191
mRNA
_3192
mRNA
_3193
mRNA
_3194
mRNA
_3195
11559
11560
11561
11562
11563
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.1
N.D.
-1.7
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.6
N.D.
+0.6
-0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.0
N.D.
-0.3
-0.3
growth on oleic acid
YNB Oleic Acid
-0.1
-0.4
N.D.
+0.0
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.7
N.D.
+0.1
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.0
N.D.
-0.3
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.1
N.D.
-0.2
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.1
N.D.
-0.1
-0.1
growth on ricinoleic acid
YNB Glucose
+0.1
+0.1
N.D.
-0.2
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.3
N.D.
-0.6
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.1
N.D.
+0.1
+0.0
growth on oleic acid
YNB Glucose
-0.1
-0.2
N.D.
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.3
N.D.
+0.3
+0.1
auxotrophy
YNB Glucose
+0.3
-0.0
N.D.
-0.3
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
+0.1
N.D.
+0.2
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-0.0
N.D.
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.3
N.D.
+0.3
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.4
+0.1
N.D.
-0.1
+0.2
auxotrophy
Dropout Complete
-0.1
+0.3
N.D.
-0.0
+0.6
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.1
N.D.
+0.0
+0.8
growth on ypd
YPD
+0.1
+1.1
N.D.
+0.3
+0.1
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