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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11561 and 11562 are separated by 1829 nucleotides
11562 and 11563 are separated by 1246 nucleotides
11563 and 11564 are separated by 426 nucleotides
11564 and 11565 are separated by 495 nucleotides
mRNA_3193: 11561 - K13116 DDX41, ABS ATP-dependent RNA helicase DDX41, at 53,997 to 56,662
11561
mRNA_3194: 11562 - Hypothetical Protein, at 58,492 to 59,376
11562
mRNA_3195: 11563 - Hypothetical Protein, at 60,623 to 61,680
11563
mRNA_3196: 11564 - Hypothetical Protein, at 62,107 to 63,896
11564
mRNA_3197: 11565 - BLAST similar to An12g07160 [Aspergillus kawachii IFO 4308], at 64,392 to 66,116
11565
Group
Condition
mRNA
_3193
mRNA
_3194
mRNA
_3195
mRNA
_3196
mRNA
_3197
11561
11562
11563
11564
11565
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-1.7
-0.1
+0.3
-0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.6
+0.3
-0.3
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.3
-0.3
-0.2
+0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.3
+0.2
-0.1
+0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.2
-0.2
+0.2
-0.0
growth on ricinoleic acid
YNB Glucose
N.D.
-0.2
-0.1
+0.3
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.1
+0.2
+0.1
-0.1
auxotrophy
YNB Glucose
N.D.
-0.3
+0.3
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.1
+0.0
-0.1
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.6
-0.7
+0.3
+0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.1
+0.1
+0.1
+0.1
growth on oleic acid
YNB Oleic Acid
N.D.
+0.0
-0.1
+0.4
+0.3
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
-0.1
+0.5
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.0
+0.8
-0.2
+0.0
auxotrophy
Dropout Complete
N.D.
-0.0
+0.6
-0.1
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.2
+0.2
+0.0
+0.3
growth on oleic acid
YNB Glucose
N.D.
+0.2
+0.2
+0.2
+0.3
growth on ypd
YPD
N.D.
+0.3
+0.1
+0.4
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.3
+0.2
+0.2
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.3
+0.1
+0.2
+0.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.1
+0.3
+0.4
+0.4
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