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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11563 and 11564 are separated by 426 nucleotides
11564 and 11565 are separated by 495 nucleotides
11565 and 11566 are separated by 661 nucleotides
11566 and 11567 are separated by 256 nucleotides
mRNA_3195: 11563 - Hypothetical Protein, at 60,623 to 61,680
11563
mRNA_3196: 11564 - Hypothetical Protein, at 62,107 to 63,896
11564
mRNA_3197: 11565 - BLAST similar to An12g07160 [Aspergillus kawachii IFO 4308], at 64,392 to 66,116
11565
mRNA_3198: 11566 - K20176 SGSM3, MAP small G protein signaling modulator 3, at 66,778 to 71,121
11566
mRNA_3199: 11567 - K12881 THOC4, ALY THO complex subunit 4, at 71,378 to 73,355
11567
Group
Condition
mRNA
_3195
mRNA
_3196
mRNA
_3197
mRNA
_3198
mRNA
_3199
11563
11564
11565
11566
11567
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-0.3
-0.5
-0.4
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.3
-0.7
-0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.7
+0.3
+0.2
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.2
+0.1
+0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.2
-0.0
+0.0
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.1
+0.1
-0.0
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.0
+0.3
-0.4
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.1
-0.1
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.1
+0.1
-0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.5
+0.3
-0.4
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.8
-0.2
+0.0
-0.4
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.1
+0.3
+0.1
N.D.
growth on ricinoleic acid
YNB Glucose
-0.1
+0.3
-0.1
+0.3
N.D.
growth on ypd
YPD
+0.1
+0.4
+0.3
-0.2
N.D.
auxotrophy
YNB Glucose
+0.3
+0.2
+0.1
+0.0
N.D.
growth on oleic acid
YNB Glucose
+0.2
+0.2
+0.3
+0.0
N.D.
auxotrophy
Dropout Complete
+0.6
-0.1
+0.3
+0.0
N.D.
growth on oleic acid
YNB Oleic Acid
-0.1
+0.4
+0.3
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.2
+0.4
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.2
+0.7
+0.4
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
+0.4
+0.4
+0.4
N.D.
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