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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11565 and 11566 are separated by 661 nucleotides
11566 and 11567 are separated by 256 nucleotides
11567 and 11568 are separated by 637 nucleotides
11568 and 11569 are separated by 199 nucleotides
mRNA_3197: 11565 - BLAST similar to An12g07160 [Aspergillus kawachii IFO 4308], at 64,392 to 66,116
11565
mRNA_3198: 11566 - K20176 SGSM3, MAP small G protein signaling modulator 3, at 66,778 to 71,121
11566
mRNA_3199: 11567 - K12881 THOC4, ALY THO complex subunit 4, at 71,378 to 73,355
11567
mRNA_3200: 11568 - KOG1515 Arylacetamide deacetylase, at 73,993 to 76,977
11568
mRNA_3201: 11569 - K12175 GPS1, COPS1, CSN1 COP9 signalosome complex subunit 1, at 77,177 to 79,098
11569
Group
Condition
mRNA
_3197
mRNA
_3198
mRNA
_3199
mRNA
_3200
mRNA
_3201
11565
11566
11567
11568
11569
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.4
N.D.
-0.1
-1.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.4
N.D.
+0.1
-1.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.2
N.D.
-0.3
-0.9
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.0
N.D.
+0.0
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-0.7
-0.1
N.D.
-0.4
+0.9
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.4
N.D.
-0.0
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
-0.4
N.D.
+0.1
+0.7
growth on ypd
YPD
+0.3
-0.2
N.D.
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.1
N.D.
-0.1
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.0
N.D.
-0.0
+0.2
growth on ricinoleic acid
YNB Glucose
-0.1
+0.3
N.D.
-0.0
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
+0.4
N.D.
-0.1
-0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.1
N.D.
+0.2
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.1
N.D.
+0.2
+0.3
growth on oleic acid
YNB Oleic Acid
+0.3
+0.2
N.D.
+0.1
-0.1
growth on oleic acid
YNB Glucose
+0.3
+0.0
N.D.
-0.0
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+0.2
N.D.
+0.1
-0.1
auxotrophy
YNB Glucose
+0.1
+0.0
N.D.
+0.4
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.2
N.D.
+0.0
+0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.7
+0.4
N.D.
+0.1
+0.1
auxotrophy
Dropout Complete
+0.3
+0.0
N.D.
+0.2
+1.0
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