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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11567 and 11568 are separated by 637 nucleotides
11568 and 11569 are separated by 199 nucleotides
11569 and 11570 are separated by 476 nucleotides
11570 and 11571 are separated by 142 nucleotides
mRNA_3199: 11567 - K12881 THOC4, ALY THO complex subunit 4, at 71,378 to 73,355
11567
mRNA_3200: 11568 - KOG1515 Arylacetamide deacetylase, at 73,993 to 76,977
11568
mRNA_3201: 11569 - K12175 GPS1, COPS1, CSN1 COP9 signalosome complex subunit 1, at 77,177 to 79,098
11569
mRNA_3202: 11570 - KOG2533 Permease of the major facilitator superfamily, at 79,575 to 81,413
11570
mRNA_3203: 11571 - Hypothetical Protein, at 81,556 to 81,888
11571
Group
Condition
mRNA
_3199
mRNA
_3200
mRNA
_3201
mRNA
_3202
mRNA
_3203
11567
11568
11569
11570
11571
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.1
-0.4
-0.2
-0.7
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.1
-1.4
+0.2
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.1
-1.3
-0.0
+0.5
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.0
-0.4
+0.2
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.3
-0.9
+0.3
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.1
+0.1
+0.6
-1.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.1
-0.3
+0.3
-0.1
growth on oleic acid
YNB Glucose
N.D.
-0.0
+0.1
-0.2
+0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.0
+0.0
-0.0
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.1
-0.1
+0.4
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.0
+0.6
+0.3
-0.4
growth on ypd
YPD
N.D.
-0.1
+0.1
-0.3
+0.9
growth on ricinoleic acid
YNB Glucose
N.D.
-0.0
+0.1
+0.1
+0.4
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
-0.1
-0.2
+0.9
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.0
+0.2
-0.1
+0.6
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.4
+0.9
-0.3
+1.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.1
+0.7
-0.2
+1.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.2
-0.0
+0.1
+1.7
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.2
+0.3
+0.1
+2.0
auxotrophy
YNB Glucose
N.D.
+0.4
+0.1
-0.0
+2.2
auxotrophy
Dropout Complete
N.D.
+0.2
+1.0
+0.2
+2.3
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