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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11570 and 11571 are separated by 142 nucleotides
11571 and 11572 are separated by 256 nucleotides
11572 and 11573 are separated by 220 nucleotides
11573 and 11574 are separated by 220 nucleotides
mRNA_3202: 11570 - KOG2533 Permease of the major facilitator superfamily, at 79,575 to 81,413
11570
mRNA_3203: 11571 - Hypothetical Protein, at 81,556 to 81,888
11571
mRNA_3204: 11572 - SUPERFAMILY--SSF69118, at 82,145 to 83,066
11572
mRNA_3205: 11573 - K13281 uvsE, UVE1 UV DNA damage endonuclease, at 83,287 to 85,713
11573
mRNA_3206: 11574 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 85,934 to 91,274
11574
Group
Condition
mRNA
_3202
mRNA
_3203
mRNA
_3204
mRNA
_3205
mRNA
_3206
11570
11571
11572
11573
11574
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.7
+0.2
-0.0
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.5
-0.4
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.6
-1.3
+0.2
+0.1
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.2
-0.9
-0.2
+0.3
growth on oleic acid
YNB Glucose
-0.2
+0.2
-0.1
+0.1
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+1.0
+0.1
-0.5
-0.1
growth on oleic acid
YNB Oleic Acid
-0.2
+0.9
-0.0
-0.3
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.4
+0.7
+0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.5
-0.2
+0.1
+0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.4
+0.3
+0.2
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
+1.2
-0.3
+0.4
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.1
+0.7
-0.1
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.4
+0.3
-0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.6
+0.3
+0.2
-0.1
growth on ricinoleic acid
YNB Glucose
+0.1
+0.4
+0.5
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+0.0
+0.6
+0.1
+0.1
growth on ypd
YPD
-0.3
+0.9
+0.8
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+1.7
+0.5
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+2.0
+0.5
+0.0
-0.1
auxotrophy
YNB Glucose
-0.0
+2.2
+0.7
-0.1
-0.1
auxotrophy
Dropout Complete
+0.2
+2.3
+0.6
+0.1
-0.2
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