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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11572 and 11573 are separated by 220 nucleotides
11573 and 11574 are separated by 220 nucleotides
11574 and 11575 are separated by 287 nucleotides
11575 and 11576 are separated by 505 nucleotides
mRNA_3204: 11572 - SUPERFAMILY--SSF69118, at 82,145 to 83,066
11572
mRNA_3205: 11573 - K13281 uvsE, UVE1 UV DNA damage endonuclease, at 83,287 to 85,713
11573
mRNA_3206: 11574 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 85,934 to 91,274
11574
mRNA_3207: 11575 - Hypothetical Protein, at 91,562 to 92,218
11575
mRNA_3208: 11576 - HMMPfam-Meiotically up-regulated gene 113-PF13455, at 92,724 to 94,778
11576
Group
Condition
mRNA
_3204
mRNA
_3205
mRNA
_3206
mRNA
_3207
mRNA
_3208
11572
11573
11574
11575
11576
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.5
-0.1
-0.1
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
+0.4
-0.4
+0.0
-0.2
growth on oleic acid
YNB Oleic Acid
-0.0
-0.3
-0.0
+0.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.9
-0.2
+0.3
+0.8
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.4
+0.2
-0.1
+0.3
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.1
+0.3
+0.2
-0.4
growth on oleic acid
YNB Glucose
-0.1
+0.1
+0.1
-0.0
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.0
-0.2
-0.1
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
-0.1
-0.1
-0.2
+0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.5
-0.1
-0.1
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.1
-0.0
+0.3
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.7
-0.1
-0.2
+0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.2
-0.2
+0.2
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.3
+0.2
-0.1
+0.1
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.5
+0.0
-0.1
+0.2
+0.1
auxotrophy
YNB Glucose
+0.7
-0.1
-0.1
+0.0
+0.0
growth on ricinoleic acid
YNB Glucose
+0.5
-0.1
+0.0
-0.1
+0.3
auxotrophy
Dropout Complete
+0.6
+0.1
-0.2
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.7
+0.1
-0.1
+0.2
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.6
+0.1
+0.1
+0.3
+0.0
growth on ypd
YPD
+0.8
+0.1
+0.1
+0.1
+0.0
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