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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11575 and 11576 are separated by 505 nucleotides
11576 and 11577 are separated by 965 nucleotides
11577 and 11578 are separated by 278 nucleotides
11578 and 11579 are separated by 159 nucleotides
mRNA_3207: 11575 - Hypothetical Protein, at 91,562 to 92,218
11575
mRNA_3208: 11576 - HMMPfam-Meiotically up-regulated gene 113-PF13455, at 92,724 to 94,778
11576
mRNA_3209: 11577 - Hypothetical Protein, at 95,744 to 98,235
11577
mRNA_3210: 11578 - K03512 POLL DNA polymerase lambda, at 98,514 to 102,281
11578
mRNA_3211: 11579 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 102,441 to 104,131
11579
Group
Condition
mRNA
_3207
mRNA
_3208
mRNA
_3209
mRNA
_3210
mRNA
_3211
11575
11576
11577
11578
11579
growth on oleic acid
YNB Glucose
-0.0
+0.0
-0.2
+0.1
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
-0.2
+0.0
-0.2
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.1
-0.1
-0.3
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.4
-0.3
-0.1
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.4
-0.1
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.2
+0.1
-0.4
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.3
-0.0
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.0
-0.1
-0.3
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.3
-0.2
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.1
-0.1
-0.1
+0.1
auxotrophy
Dropout Complete
+0.3
+0.1
-0.4
-0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.0
-0.2
+0.1
-0.0
auxotrophy
YNB Glucose
+0.0
+0.0
-0.1
-0.0
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.1
-0.2
-0.0
+0.0
growth on oleic acid
YNB Oleic Acid
+0.1
-0.1
-0.4
+0.4
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.0
-0.1
-0.0
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.0
-0.2
-0.0
+0.1
growth on ricinoleic acid
YNB Glucose
-0.1
+0.3
-0.1
-0.1
+0.1
growth on ypd
YPD
+0.1
+0.0
+0.1
+0.3
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.3
-0.0
-0.1
+0.0
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.8
-0.2
-0.0
-0.1
-0.1
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