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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11577 and 11578 are separated by 278 nucleotides
11578 and 11579 are separated by 159 nucleotides
11579 and 11580 are separated by 202 nucleotides
11580 and 11581 are separated by 262 nucleotides
mRNA_3209: 11577 - Hypothetical Protein, at 95,744 to 98,235
11577
mRNA_3210: 11578 - K03512 POLL DNA polymerase lambda, at 98,514 to 102,281
11578
mRNA_3211: 11579 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 102,441 to 104,131
11579
mRNA_3212: 11580 - BLAST related to TRX2-thioredoxin II [Melanopsichium pennsy..., at 104,334 to 106,276
11580
mRNA_3213: 11581 - HMMPfam-Tubulin domain-PF14881,SUPERFAMILY--SSF52490, at 106,539 to 109,229
11581
Group
Condition
mRNA
_3209
mRNA
_3210
mRNA
_3211
mRNA
_3212
mRNA
_3213
11577
11578
11579
11580
11581
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.3
-0.1
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.0
+0.1
-0.4
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
-0.2
+0.0
-0.3
N.D.
growth on oleic acid
YNB Glucose
-0.2
+0.1
-0.2
-0.0
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.1
-0.0
+0.2
N.D.
auxotrophy
Dropout Complete
-0.4
-0.1
-0.1
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.4
-0.0
+0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.1
-0.0
+0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.1
-0.0
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.3
-0.0
+0.4
N.D.
growth on ypd
YPD
+0.1
+0.3
-0.2
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.1
+0.1
-0.0
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.0
+0.0
+0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.0
+0.1
+0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.0
+0.1
-0.0
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.1
+0.1
+0.2
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
+0.1
+0.1
-0.1
N.D.
growth on oleic acid
YNB Oleic Acid
-0.4
+0.4
+0.1
+0.1
N.D.
growth on ricinoleic acid
YNB Glucose
-0.1
-0.1
+0.1
+0.3
N.D.
auxotrophy
YNB Glucose
-0.1
-0.0
+0.0
+0.3
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-0.1
-0.1
+0.4
N.D.
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