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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11579 and 11580 are separated by 202 nucleotides
11580 and 11581 are separated by 262 nucleotides
11581 and 11582 are separated by 398 nucleotides
11582 and 11583 are separated by 196 nucleotides
mRNA_3211: 11579 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 102,441 to 104,131
11579
mRNA_3212: 11580 - BLAST related to TRX2-thioredoxin II [Melanopsichium pennsy..., at 104,334 to 106,276
11580
mRNA_3213: 11581 - HMMPfam-Tubulin domain-PF14881,SUPERFAMILY--SSF52490, at 106,539 to 109,229
11581
mRNA_3214: 11582 - KOG3989 Beta-2-glycoprotein I, at 109,628 to 110,560
11582
mRNA_3215: 11583 - K17103 CHO1, pssA CDP-diacylglycerol---serine O-phosphatidyltransferase, at 110,757 to 112,157
11583
Group
Condition
mRNA
_3211
mRNA
_3212
mRNA
_3213
mRNA
_3214
mRNA
_3215
11579
11580
11581
11582
11583
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.1
N.D.
-1.9
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.4
N.D.
-0.7
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
-0.3
N.D.
-0.6
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.0
N.D.
-0.8
N.D.
growth on ypd
YPD
-0.2
-0.2
N.D.
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.1
N.D.
-0.6
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.4
N.D.
-0.7
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.0
+0.2
N.D.
-0.5
N.D.
auxotrophy
Dropout Complete
-0.1
+0.2
N.D.
-0.4
N.D.
growth on oleic acid
YNB Oleic Acid
+0.1
+0.1
N.D.
-0.4
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.1
N.D.
+0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.4
N.D.
-0.2
N.D.
auxotrophy
YNB Glucose
+0.0
+0.3
N.D.
-0.0
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.2
N.D.
+0.5
N.D.
growth on ricinoleic acid
YNB Glucose
+0.1
+0.3
N.D.
-0.1
N.D.
growth on oleic acid
YNB Glucose
-0.2
-0.0
N.D.
+0.6
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
+0.2
N.D.
+0.4
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
+0.2
N.D.
+0.5
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.0
N.D.
+0.7
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.2
N.D.
+0.5
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.0
N.D.
+1.1
N.D.
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