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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11585 and 11586 are separated by 1940 nucleotides
11586 and 11587 are separated by 5406 nucleotides
11587 and 11588 are separated by 192 nucleotides
11588 and 11589 are separated by 1290 nucleotides
mRNA_3217: 11585 - Hypothetical Protein, at 116,646 to 116,855
11585
mRNA_3218: 11586 - PRINTS-Proline rich extensin signature-PR01217, at 118,796 to 120,170
11586
mRNA_3219: 11587 - HMMPfam-RNase H-PF00075,ProSiteProfiles-RNase H domain profile.-PS50879,SUPERFAMILY--SSF53098, at 125,577 to 131,824
11587
mRNA_3220: 11588 - KOG0686 COP9 signalosome, subunit CSN1, at 132,017 to 133,130
11588
mRNA_3221: 11589 - KOG2533 Permease of the major facilitator superfamily, at 134,421 to 136,280
11589
Group
Condition
mRNA
_3217
mRNA
_3218
mRNA
_3219
mRNA
_3220
mRNA
_3221
11585
11586
11587
11588
11589
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.4
+0.0
-0.4
-0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.1
+0.1
-0.9
-0.2
auxotrophy
YNB Glucose
N.D.
+0.1
+0.0
-0.7
-0.4
growth on ricinoleic acid
YNB Glucose
N.D.
-0.0
+0.1
-0.9
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.6
-0.0
+0.6
-0.6
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.0
+0.0
-0.9
+0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.1
+0.1
-0.3
-0.5
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
-0.1
-0.1
-0.3
auxotrophy
Dropout Complete
N.D.
+0.2
-0.0
-0.1
-0.5
growth on oleic acid
YNB Glucose
N.D.
-0.1
+0.0
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.4
+0.1
+0.3
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.4
+0.1
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.1
+0.0
-0.2
-0.3
growth on ypd
YPD
N.D.
+0.1
+0.1
-0.3
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.0
+0.1
-0.3
+0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.0
-0.1
+0.2
-0.2
growth on oleic acid
YNB Oleic Acid
N.D.
-0.1
+0.0
+0.4
-0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
-0.1
+0.4
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.0
+0.0
+0.2
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.1
+0.1
+0.2
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.2
-0.0
+0.3
+0.2
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