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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11588 and 11589 are separated by 1290 nucleotides
11589 and 11590 are separated by 120 nucleotides
11590 and 11591 are separated by 255 nucleotides
11591 and 11592 are separated by 390 nucleotides
mRNA_3220: 11588 - KOG0686 COP9 signalosome, subunit CSN1, at 132,017 to 133,130
11588
mRNA_3221: 11589 - KOG2533 Permease of the major facilitator superfamily, at 134,421 to 136,280
11589
mRNA_3222: 11590 - Hypothetical Protein, at 136,401 to 136,739
11590
mRNA_3223: 11591 - Hypothetical Protein, at 136,995 to 137,729
11591
mRNA_3224: 11592 - BLAST UvdE-domain-containing protein [Gloeophyllum trab..., at 138,120 to 138,730
11592
Group
Condition
mRNA
_3220
mRNA
_3221
mRNA
_3222
mRNA
_3223
mRNA
_3224
11588
11589
11590
11591
11592
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
-0.5
N.D.
-0.8
N.D.
growth on ypd
YPD
-0.3
-0.1
N.D.
-0.9
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.9
+0.2
N.D.
-0.3
N.D.
growth on ricinoleic acid
YNB Glucose
-0.9
-0.1
N.D.
-0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.9
-0.2
N.D.
+0.3
N.D.
auxotrophy
YNB Glucose
-0.7
-0.4
N.D.
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.1
N.D.
-0.5
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
+0.1
N.D.
-0.4
N.D.
auxotrophy
Dropout Complete
-0.1
-0.5
N.D.
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
-0.6
N.D.
-0.4
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.3
N.D.
+0.0
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.5
N.D.
+0.5
N.D.
growth on oleic acid
YNB Glucose
-0.2
-0.2
N.D.
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.4
N.D.
-0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.2
N.D.
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.3
N.D.
+0.4
N.D.
growth on oleic acid
YNB Oleic Acid
+0.4
-0.3
N.D.
-0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.4
-0.1
N.D.
-0.2
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
+0.2
N.D.
+0.2
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.2
N.D.
+0.2
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.1
N.D.
+0.3
N.D.
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