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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11596 and 11597 are separated by 229 nucleotides
11597 and 11598 are separated by 940 nucleotides
11598 and 11599 are separated by 42 nucleotides
11599 and 11600 are separated by 315 nucleotides
mRNA_3228: 11596 - Hypothetical Protein, at 150,554 to 152,280
11596
mRNA_3229: 11597 - K01113 phoD alkaline phosphatase D, at 152,510 to 154,539
11597
mRNA_3230: 11598 - HMMPfam-Region of unknown function (DUF2417)-PF10329, at 155,480 to 157,759
11598
mRNA_3231: 11599 - KOG1430 C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases, at 157,802 to 159,637
11599
mRNA_3232: 11600 - ProSiteProfiles-BRCT domain profile.-PS50172, at 159,953 to 161,045
11600
Group
Condition
mRNA
_3228
mRNA
_3229
mRNA
_3230
mRNA
_3231
mRNA
_3232
11596
11597
11598
11599
11600
growth on oleic acid
YNB Glucose
-0.0
-0.2
-0.0
+0.1
-1.3
auxotrophy
Dropout Complete
+0.1
-0.1
-0.3
-0.1
-0.8
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.2
-0.2
-0.1
-0.5
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.0
+0.2
-0.1
-1.0
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.1
-0.2
+0.3
-0.9
growth on oleic acid
YNB Oleic Acid
-0.1
+0.1
+0.1
+0.0
-0.4
auxotrophy
YNB Glucose
+0.2
+0.0
-0.2
-0.0
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.3
-0.1
-0.4
+0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.1
+0.0
-0.3
+0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
+0.3
+0.1
+0.4
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.0
+0.0
-0.2
+0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.2
+0.2
-0.1
+1.2
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.1
+0.1
+0.3
+0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
-0.1
+0.0
-0.2
+1.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.5
-0.1
-0.5
+1.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.0
+0.2
-0.3
+1.8
growth on ypd
YPD
+0.0
-0.2
+0.3
-0.3
+1.8
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.4
-0.0
-0.3
+1.4
growth on ricinoleic acid
YNB Glucose
+0.1
+0.3
-0.2
-0.2
+1.8
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.1
+0.1
+0.2
+1.5
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.1
+0.2
+0.3
+1.4
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