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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11598 and 11599 are separated by 42 nucleotides
11599 and 11600 are separated by 315 nucleotides
11600 and 11601 are separated by 423 nucleotides
11601 and 11602 are separated by 181 nucleotides
mRNA_3230: 11598 - HMMPfam-Region of unknown function (DUF2417)-PF10329, at 155,480 to 157,759
11598
mRNA_3231: 11599 - KOG1430 C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases, at 157,802 to 159,637
11599
mRNA_3232: 11600 - ProSiteProfiles-BRCT domain profile.-PS50172, at 159,953 to 161,045
11600
mRNA_3233: 11601 - KOG1339 Aspartyl protease, at 161,469 to 163,797
11601
mRNA_3234: 11602 - Hypothetical Protein, at 163,979 to 166,240
11602
Group
Condition
mRNA
_3230
mRNA
_3231
mRNA
_3232
mRNA
_3233
mRNA
_3234
11598
11599
11600
11601
11602
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.1
-1.0
-0.9
-0.0
auxotrophy
Dropout Complete
-0.3
-0.1
-0.8
-0.0
-0.5
growth on oleic acid
YNB Glucose
-0.0
+0.1
-1.3
+0.0
-0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.1
-0.5
-0.0
-0.3
growth on oleic acid
YNB Oleic Acid
+0.1
+0.0
-0.4
+0.1
-0.8
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.3
-0.9
-0.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.4
+0.6
-0.6
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.4
-0.2
-0.2
-0.9
auxotrophy
YNB Glucose
-0.2
-0.0
-0.3
+0.1
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.2
+0.6
-0.1
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.3
+0.5
-0.1
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.3
+1.4
+0.1
-0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
-0.2
+1.6
-0.4
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.5
+1.5
+0.3
-0.3
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.3
+0.7
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.1
+1.2
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.3
+1.8
-0.1
-0.1
growth on ricinoleic acid
YNB Glucose
-0.2
-0.2
+1.8
+0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.2
+1.5
-0.1
+0.0
growth on ypd
YPD
+0.3
-0.3
+1.8
-0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.3
+1.4
-0.2
+0.1
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