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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11606 and 11607 are separated by 141 nucleotides
11607 and 11608 are separated by 1290 nucleotides
11608 and 11609 are separated by 466 nucleotides
11609 and 11610 are separated by 114 nucleotides
mRNA_3238: 11606 - BLAST RNA replication protein [Rhizoctonia solani], at 184,726 to 188,428
11606
mRNA_3239: 11607 - K15425 PPP4R2 serine/threonine-protein phosphatase 4 regulatory subunit 2, at 188,570 to 189,872
11607
mRNA_3240: 11608 - Hypothetical Protein, at 191,163 to 192,030
11608
mRNA_3241: 11609 - SUPERFAMILY--SSF52047, at 192,497 to 194,768
11609
mRNA_3242: 11610 - K01814 hisA phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, at 194,883 to 196,226
11610
Group
Condition
mRNA
_3238
mRNA
_3239
mRNA
_3240
mRNA
_3241
mRNA
_3242
11606
11607
11608
11609
11610
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
-0.6
-0.2
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.4
+0.0
-0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.0
-0.1
-0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.1
+0.1
-0.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.0
+0.0
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.2
-0.1
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.1
-0.0
-0.2
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-0.4
+0.3
-0.1
N.D.
growth on oleic acid
YNB Oleic Acid
+0.1
-0.2
+0.1
-0.1
N.D.
growth on oleic acid
YNB Glucose
-0.1
-0.2
+0.0
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.6
-0.3
-0.1
N.D.
growth on ypd
YPD
+0.0
+0.1
+0.2
-0.1
N.D.
auxotrophy
Dropout Complete
+0.1
+0.4
+0.1
-0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.3
+0.2
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.2
+0.1
-0.1
N.D.
growth on ricinoleic acid
YNB Glucose
-0.1
+0.1
+0.3
+0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
+0.0
+0.2
+0.3
N.D.
auxotrophy
YNB Glucose
+0.2
+0.3
+0.4
-0.2
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.3
+0.1
+0.2
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.2
+0.2
+0.2
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
+1.2
+0.0
-0.1
N.D.
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