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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11608 and 11609 are separated by 466 nucleotides
11609 and 11610 are separated by 114 nucleotides
11610 and 11611 are separated by 385 nucleotides
11611 and 11612 are separated by 849 nucleotides
mRNA_3240: 11608 - Hypothetical Protein, at 191,163 to 192,030
11608
mRNA_3241: 11609 - SUPERFAMILY--SSF52047, at 192,497 to 194,768
11609
mRNA_3242: 11610 - K01814 hisA phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, at 194,883 to 196,226
11610
mRNA_3243: 11611 - K10752 RBBP4, HAT2, CAF1, MIS16 histone-binding protein RBBP4, at 196,612 to 198,456
11611
mRNA_3244: 11612 - Hypothetical Protein, at 199,306 to 200,606
11612
Group
Condition
mRNA
_3240
mRNA
_3241
mRNA
_3242
mRNA
_3243
mRNA
_3244
11608
11609
11610
11611
11612
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.1
N.D.
N.D.
-1.9
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.1
N.D.
N.D.
-0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.1
N.D.
N.D.
-0.5
auxotrophy
Dropout Complete
+0.1
-0.2
N.D.
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.2
N.D.
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.1
N.D.
N.D.
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.2
N.D.
N.D.
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.3
N.D.
N.D.
-0.5
growth on oleic acid
YNB Glucose
+0.0
+0.2
N.D.
N.D.
-0.0
growth on ypd
YPD
+0.2
-0.1
N.D.
N.D.
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.1
N.D.
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.2
N.D.
N.D.
+0.6
auxotrophy
YNB Glucose
+0.4
-0.2
N.D.
N.D.
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.1
N.D.
N.D.
+0.2
growth on ricinoleic acid
YNB Glucose
+0.3
+0.2
N.D.
N.D.
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.2
N.D.
N.D.
+0.8
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.2
N.D.
N.D.
+0.3
growth on oleic acid
YNB Oleic Acid
+0.1
-0.1
N.D.
N.D.
+0.7
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.1
N.D.
N.D.
+1.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-0.1
N.D.
N.D.
+2.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.2
N.D.
N.D.
+1.9
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