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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11610 and 11611 are separated by 385 nucleotides
11611 and 11612 are separated by 849 nucleotides
11612 and 11613 are separated by 459 nucleotides
11613 and 11614 are separated by 1391 nucleotides
mRNA_3242: 11610 - K01814 hisA phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, at 194,883 to 196,226
11610
mRNA_3243: 11611 - K10752 RBBP4, HAT2, CAF1, MIS16 histone-binding protein RBBP4, at 196,612 to 198,456
11611
mRNA_3244: 11612 - Hypothetical Protein, at 199,306 to 200,606
11612
mRNA_3245: 11613 - HMMPfam-Fungal protein of unknown function (DUF1752)-PF08550,HMMPfam-Protein of unknown function (DUF3295)-PF11702, at 201,066 to 204,037
11613
mRNA_3246: 11614 - Hypothetical Protein, at 205,429 to 207,188
11614
Group
Condition
mRNA
_3242
mRNA
_3243
mRNA
_3244
mRNA
_3245
mRNA
_3246
11610
11611
11612
11613
11614
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-1.9
-0.6
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
-0.5
-1.7
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
-0.2
-1.6
-0.3
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
+0.0
-0.8
-0.1
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.0
-0.7
-0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.2
-0.4
-0.4
auxotrophy
Dropout Complete
N.D.
N.D.
-0.3
+0.1
-0.3
auxotrophy
YNB Glucose
N.D.
N.D.
+0.2
-0.4
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.5
+0.0
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
+2.0
-1.8
-0.4
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
+0.3
-0.3
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
+1.9
-1.4
-0.6
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-0.3
+0.5
-0.2
growth on ypd
YPD
N.D.
N.D.
+0.1
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.6
-0.0
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.6
+0.9
-0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.4
+0.3
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
+1.3
-0.2
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
+0.2
+1.4
-0.5
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
+0.8
+0.7
-0.0
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.7
+1.1
-0.1
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