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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11613 and 11614 are separated by 1391 nucleotides
11614 and 11615 are separated by 397 nucleotides
11615 and 11616 are separated by 907 nucleotides
11616 and 11617 are separated by 476 nucleotides
mRNA_3245: 11613 - HMMPfam-Fungal protein of unknown function (DUF1752)-PF08550,HMMPfam-Protein of unknown function (DUF3295)-PF11702, at 201,066 to 204,037
11613
mRNA_3246: 11614 - Hypothetical Protein, at 205,429 to 207,188
11614
mRNA_3247: 11615 - Hypothetical Protein, at 207,586 to 209,247
11615
mRNA_3248: 11616 - Hypothetical Protein, at 210,155 to 211,275
11616
mRNA_3249: 11617 - Hypothetical Protein, at 211,752 to 212,300
11617
Group
Condition
mRNA
_3245
mRNA
_3246
mRNA
_3247
mRNA
_3248
mRNA
_3249
11613
11614
11615
11616
11617
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
+0.0
+0.3
-2.0
-1.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.8
-0.4
-0.2
-0.4
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.7
-0.3
+0.0
+0.3
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
-1.4
-0.6
-0.1
+0.3
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-1.6
-0.3
+0.2
+0.3
-0.3
growth on ricinoleic acid
YNB Glucose
-0.8
-0.1
-0.3
-0.4
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.3
-0.1
-0.1
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.4
-0.4
+0.1
+0.0
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-0.5
-0.1
+0.1
-0.3
growth on ypd
YPD
+0.2
-0.2
-0.3
-0.4
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.2
+0.1
+0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
+0.1
-0.2
-0.1
-0.1
auxotrophy
YNB Glucose
-0.4
-0.2
+0.1
+0.2
+0.0
growth on oleic acid
YNB Glucose
-0.7
-0.1
-0.1
+0.4
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.3
-0.4
-0.1
+0.1
-0.1
auxotrophy
Dropout Complete
+0.1
-0.3
+0.1
-0.2
+0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+1.4
-0.5
-0.2
-0.4
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.5
-0.2
+0.1
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.9
-0.2
+0.1
+0.3
-0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.7
-0.0
+0.2
+0.4
-0.0
growth on oleic acid
YNB Oleic Acid
+1.1
-0.1
+0.0
+0.2
+0.2
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