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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11615 and 11616 are separated by 907 nucleotides
11616 and 11617 are separated by 476 nucleotides
11617 and 11618 are separated by 155 nucleotides
11618 and 11619 are separated by 246 nucleotides
mRNA_3247: 11615 - Hypothetical Protein, at 207,586 to 209,247
11615
mRNA_3248: 11616 - Hypothetical Protein, at 210,155 to 211,275
11616
mRNA_3249: 11617 - Hypothetical Protein, at 211,752 to 212,300
11617
mRNA_3250: 11618 - K00415 QCR2, UQCRC2 ubiquinol-cytochrome c reductase core subunit 2, at 212,456 to 214,047
11618
mRNA_3251: 11619 - K19986 EXOC8, SEC84 exocyst complex component 8, at 214,294 to 217,210
11619
Group
Condition
mRNA
_3247
mRNA
_3248
mRNA
_3249
mRNA
_3250
mRNA
_3251
11615
11616
11617
11618
11619
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-2.0
-1.1
N.D.
-2.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.4
+0.0
N.D.
-1.7
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.1
-0.2
N.D.
-1.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.3
+0.0
N.D.
-1.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.1
-0.3
N.D.
-0.2
auxotrophy
YNB Glucose
+0.1
+0.2
+0.0
N.D.
-0.6
growth on ricinoleic acid
YNB Glucose
-0.3
-0.4
+0.2
N.D.
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.1
-0.1
N.D.
+0.2
growth on ypd
YPD
-0.3
-0.4
+0.0
N.D.
+0.6
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.0
-0.2
N.D.
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.1
-0.1
N.D.
-0.1
auxotrophy
Dropout Complete
+0.1
-0.2
+0.5
N.D.
-0.4
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.1
-0.1
N.D.
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.4
+0.1
N.D.
+0.7
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.2
-0.1
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.3
-0.3
N.D.
+0.5
growth on oleic acid
YNB Oleic Acid
+0.0
+0.2
+0.2
N.D.
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.4
-0.0
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.3
-0.3
N.D.
+0.8
growth on oleic acid
YNB Glucose
-0.1
+0.4
+0.2
N.D.
+0.9
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.3
-0.5
N.D.
+1.8
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