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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11617 and 11618 are separated by 155 nucleotides
11618 and 11619 are separated by 246 nucleotides
11619 and 11620 are separated by 137 nucleotides
11620 and 11621 are separated by 408 nucleotides
mRNA_3249: 11617 - Hypothetical Protein, at 211,752 to 212,300
11617
mRNA_3250: 11618 - K00415 QCR2, UQCRC2 ubiquinol-cytochrome c reductase core subunit 2, at 212,456 to 214,047
11618
mRNA_3251: 11619 - K19986 EXOC8, SEC84 exocyst complex component 8, at 214,294 to 217,210
11619
mRNA_3252: 11620 - KOG3348 BolA (bacterial stress-induced morphogen)-related protein, at 217,348 to 218,013
11620
mRNA_3253: 11621 - KOG1201 Hydroxysteroid 17-beta dehydrogenase 11, at 218,422 to 220,105
11621
Group
Condition
mRNA
_3249
mRNA
_3250
mRNA
_3251
mRNA
_3252
mRNA
_3253
11617
11618
11619
11620
11621
ypd buoyancy
40 hrs No Buoyancy Separation
-1.1
N.D.
-2.2
-0.6
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
N.D.
-1.7
-0.3
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
N.D.
-1.4
-0.1
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
N.D.
-1.3
+0.5
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
N.D.
+0.5
-0.5
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
N.D.
-0.2
-0.2
+0.2
auxotrophy
YNB Glucose
+0.0
N.D.
-0.6
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
N.D.
+0.8
-0.9
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.2
N.D.
+0.0
-0.2
+0.1
growth on oleic acid
YNB Oleic Acid
+0.2
N.D.
+0.2
-0.4
+0.0
growth on ricinoleic acid
YNB Glucose
+0.2
N.D.
+0.2
-0.7
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
N.D.
+0.2
-0.3
+0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.1
N.D.
-0.1
+0.3
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.1
N.D.
+0.0
+0.4
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.0
N.D.
+0.2
+0.2
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
N.D.
+0.1
+0.3
+0.2
growth on ypd
YPD
+0.0
N.D.
+0.6
+0.1
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
N.D.
+0.7
-0.6
+0.5
auxotrophy
Dropout Complete
+0.5
N.D.
-0.4
+0.7
+0.2
growth on oleic acid
YNB Glucose
+0.2
N.D.
+0.9
-0.4
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.5
N.D.
+1.8
-0.3
+0.0
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