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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11620 and 11621 are separated by 408 nucleotides
11621 and 11622 are separated by 176 nucleotides
11622 and 11623 are separated by 400 nucleotides
11623 and 11624 are separated by 1715 nucleotides
mRNA_3252: 11620 - KOG3348 BolA (bacterial stress-induced morphogen)-related protein, at 217,348 to 218,013
11620
mRNA_3253: 11621 - KOG1201 Hydroxysteroid 17-beta dehydrogenase 11, at 218,422 to 220,105
11621
mRNA_3254: 11622 - K12161 URM1 ubiquitin related modifier 1, at 220,282 to 220,812
11622
mRNA_3255: 11623 - K01711 gmd, GMDS GDPmannose 4,6-dehydratase, at 221,213 to 223,248
11623
mRNA_3256: 11624 - K01681 ACO, acnA aconitate hydratase, at 224,964 to 230,364
11624
Group
Condition
mRNA
_3252
mRNA
_3253
mRNA
_3254
mRNA
_3255
mRNA
_3256
11620
11621
11622
11623
11624
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
+0.2
-3.8
+0.3
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.1
-2.8
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.5
-0.1
-1.1
-0.3
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.9
+0.1
-0.5
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+0.0
-1.1
-0.2
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.2
-1.5
+0.6
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.2
-0.7
-0.2
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.1
-0.4
-0.1
-0.2
growth on ypd
YPD
+0.1
-0.0
-0.5
-0.1
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.5
-0.1
-0.3
+0.3
+0.1
growth on ricinoleic acid
YNB Glucose
-0.7
+0.4
+0.4
+0.2
+0.2
growth on oleic acid
YNB Glucose
-0.4
+0.2
+1.0
-0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+0.4
-0.1
+0.4
+0.3
auxotrophy
YNB Glucose
+0.1
+0.2
+0.6
-0.2
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.3
+0.2
+0.4
+0.1
-0.2
growth on oleic acid
YNB Oleic Acid
-0.4
+0.0
+1.3
-0.1
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.2
+0.5
+0.1
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.4
+0.1
+0.9
-0.1
-0.0
auxotrophy
Dropout Complete
+0.7
+0.2
+0.9
-0.1
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.1
+1.8
+0.3
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.6
+0.5
+1.6
+0.3
+0.5
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