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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11622 and 11623 are separated by 400 nucleotides
11623 and 11624 are separated by 1715 nucleotides
11624 and 11625 are separated by 356 nucleotides
11625 and 11626 are separated by 44 nucleotides
mRNA_3254: 11622 - K12161 URM1 ubiquitin related modifier 1, at 220,282 to 220,812
11622
mRNA_3255: 11623 - K01711 gmd, GMDS GDPmannose 4,6-dehydratase, at 221,213 to 223,248
11623
mRNA_3256: 11624 - K01681 ACO, acnA aconitate hydratase, at 224,964 to 230,364
11624
mRNA_3257: 11625 - K13869 SLC7A11 solute carrier family 7 (L-type amino acid transporter), member 11, at 230,721 to 232,745
11625
mRNA_3258: 11626 - K00791 miaA, TRIT1 tRNA dimethylallyltransferase, at 232,790 to 234,851
11626
Group
Condition
mRNA
_3254
mRNA
_3255
mRNA
_3256
mRNA
_3257
mRNA
_3258
11622
11623
11624
11625
11626
ypd buoyancy
40 hrs No Buoyancy Separation
-3.8
+0.3
+0.0
+0.0
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-2.8
+0.1
-0.3
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.1
-0.3
+0.1
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.7
-0.2
-0.1
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.1
-0.2
+0.2
+0.0
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.4
-0.1
-0.2
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
-0.2
+0.1
+0.0
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-1.5
+0.6
+0.1
+0.3
N.D.
growth on ypd
YPD
-0.5
-0.1
+0.0
+0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
+0.3
+0.1
+0.0
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.4
+0.1
-0.2
-0.1
N.D.
auxotrophy
YNB Glucose
+0.6
-0.2
+0.1
+0.0
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.5
+0.1
-0.0
-0.0
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.4
+0.3
+0.0
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.9
-0.1
-0.0
-0.0
N.D.
auxotrophy
Dropout Complete
+0.9
-0.1
-0.0
+0.2
N.D.
growth on oleic acid
YNB Glucose
+1.0
-0.1
-0.1
+0.1
N.D.
growth on ricinoleic acid
YNB Glucose
+0.4
+0.2
+0.2
+0.1
N.D.
growth on oleic acid
YNB Oleic Acid
+1.3
-0.1
+0.2
+0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+1.6
+0.3
+0.5
-0.2
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+1.8
+0.3
+0.2
+0.2
N.D.
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