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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11628 and 11629 are separated by 976 nucleotides
11629 and 11630 are separated by 349 nucleotides
11630 and 11631 are separated by 103 nucleotides
11631 and 11632 are separated by 264 nucleotides
mRNA_3260: 11628 - HMMPfam-Eukaryotic mitochondrial regulator protein-PF12298, at 236,332 to 237,668
11628
mRNA_3261: 11629 - K00236 SDHC, SDH3 succinate dehydrogenase (ubiquinone) cytochrome b560 subunit, at 238,645 to 239,483
11629
mRNA_3262: 11630 - SUPERFAMILY--SSF47616, at 239,833 to 240,831
11630
mRNA_3263: 11631 - BLAST Receptor-activated Ca2+-permeable cation channel [Rho..., at 240,935 to 243,648
11631
mRNA_3264: 11632 - K08495 GOSR1, GOS1 golgi SNAP receptor complex member 1, at 243,913 to 244,924
11632
Group
Condition
mRNA
_3260
mRNA
_3261
mRNA
_3262
mRNA
_3263
mRNA
_3264
11628
11629
11630
11631
11632
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
N.D.
-0.2
N.D.
growth on ypd
YPD
N.D.
N.D.
N.D.
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
N.D.
-0.1
N.D.
growth on oleic acid
YNB Glucose
N.D.
N.D.
N.D.
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
N.D.
-0.0
N.D.
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
N.D.
-0.0
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
N.D.
+0.0
N.D.
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
N.D.
+0.1
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
N.D.
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
N.D.
+0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
N.D.
+0.1
N.D.
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
N.D.
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
N.D.
+0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
N.D.
+0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
N.D.
+0.2
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
N.D.
+0.2
N.D.
auxotrophy
Dropout Complete
N.D.
N.D.
N.D.
+0.2
N.D.
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
N.D.
+0.2
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
N.D.
+0.3
N.D.
auxotrophy
YNB Glucose
N.D.
N.D.
N.D.
+0.3
N.D.
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
N.D.
+0.4
N.D.
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