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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11638 and 11639 are separated by 613 nucleotides
11639 and 11640 are separated by 311 nucleotides
11640 and 11641 are separated by 229 nucleotides
11641 and 11642 are separated by 350 nucleotides
mRNA_3270: 11638 - Hypothetical Protein, at 252,078 to 253,678
11638
mRNA_3271: 11639 - K07126 K07126 uncharacterized protein, at 254,292 to 257,031
11639
mRNA_3272: 11640 - Hypothetical Protein, at 257,343 to 259,236
11640
mRNA_3273: 11641 - K13754 SLC24A6, NCKX6 solute carrier family 24 (sodium/potassium/calcium exchanger), member 6, at 259,466 to 262,865
11641
mRNA_3274: 11642 - K00108 betA, CHDH choline dehydrogenase, at 263,216 to 265,708
11642
Group
Condition
mRNA
_3270
mRNA
_3271
mRNA
_3272
mRNA
_3273
mRNA
_3274
11638
11639
11640
11641
11642
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.9
-1.3
N.D.
-0.5
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.1
-0.8
N.D.
+0.1
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-1.1
-0.3
N.D.
+0.0
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-1.4
+0.3
N.D.
-0.1
-0.6
growth on oleic acid
YNB Glucose
-1.0
-0.4
N.D.
+0.2
+0.0
growth on oleic acid
YNB Oleic Acid
-1.2
-0.1
N.D.
+0.2
-0.1
auxotrophy
YNB Glucose
-0.8
-0.4
N.D.
+0.2
+0.1
auxotrophy
Dropout Complete
-0.8
-0.2
N.D.
+0.0
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.5
-0.4
N.D.
+0.2
+0.0
growth on ricinoleic acid
YNB Glucose
-0.6
-0.5
N.D.
+0.4
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
-0.5
N.D.
+0.4
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.5
-0.2
N.D.
+0.2
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.1
N.D.
-0.3
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+0.3
N.D.
-0.2
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.3
N.D.
+0.1
+0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.5
-0.2
N.D.
+0.1
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.7
+0.4
N.D.
+0.2
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.5
+0.1
N.D.
+0.1
+0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.1
N.D.
+0.1
+0.3
growth on ypd
YPD
+0.0
+0.3
N.D.
-0.2
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.5
N.D.
+0.4
+0.3
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