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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11641 and 11642 are separated by 350 nucleotides
11642 and 11643 are separated by 57 nucleotides
11643 and 11644 are separated by 188 nucleotides
11644 and 11645 are separated by 724 nucleotides
mRNA_3273: 11641 - K13754 SLC24A6, NCKX6 solute carrier family 24 (sodium/potassium/calcium exchanger), member 6, at 259,466 to 262,865
11641
mRNA_3274: 11642 - K00108 betA, CHDH choline dehydrogenase, at 263,216 to 265,708
11642
mRNA_3275: 11643 - BLAST methyltransferase [Obba rivulosa], at 265,766 to 267,917
11643
mRNA_3276: 11644 - BLAST Nuclease PA3 [Grifola frondosa], at 268,106 to 268,881
11644
mRNA_3277: 11645 - K14835 NOP2 ribosomal RNA methyltransferase Nop2, at 269,606 to 272,171
11645
Group
Condition
mRNA
_3273
mRNA
_3274
mRNA
_3275
mRNA
_3276
mRNA
_3277
11641
11642
11643
11644
11645
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.6
-0.0
-0.5
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.1
-0.3
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.2
-0.1
+0.0
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
-0.1
-0.1
+0.2
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-0.4
-0.3
+0.2
N.D.
growth on oleic acid
YNB Oleic Acid
+0.2
-0.1
-0.1
-0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.0
-0.1
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.1
-0.2
-0.0
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
-0.0
-0.1
-0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.0
-0.2
+0.4
N.D.
auxotrophy
Dropout Complete
+0.0
+0.1
+0.1
+0.1
N.D.
growth on oleic acid
YNB Glucose
+0.2
+0.0
-0.0
+0.0
N.D.
growth on ricinoleic acid
YNB Glucose
+0.4
+0.1
+0.0
-0.2
N.D.
auxotrophy
YNB Glucose
+0.2
+0.1
+0.2
+0.0
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.0
+0.2
+0.1
N.D.
growth on ypd
YPD
-0.2
+0.5
+0.1
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.0
+0.2
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+0.3
+0.1
-0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.4
+0.2
-0.0
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.4
+0.1
+0.0
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.3
+0.1
+0.1
N.D.
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