Fitness Browser
Home
Find Gene
BLAST
Experiments
Organisms
Help
Gene
Fitness
Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
Add gene:
Go
Number of genes on each side:
1
2
3
4
5
Go
Top 21 experiments (either direction), sorted by average fitness
Or view
all 21 experiments
or
choose conditions
or try the
comparative fitness browser
500 nt
11642 and 11643 are separated by 57 nucleotides
11643 and 11644 are separated by 188 nucleotides
11644 and 11645 are separated by 724 nucleotides
11645 and 11646 are separated by 244 nucleotides
mRNA_3274: 11642 - K00108 betA, CHDH choline dehydrogenase, at 263,216 to 265,708
11642
mRNA_3275: 11643 - BLAST methyltransferase [Obba rivulosa], at 265,766 to 267,917
11643
mRNA_3276: 11644 - BLAST Nuclease PA3 [Grifola frondosa], at 268,106 to 268,881
11644
mRNA_3277: 11645 - K14835 NOP2 ribosomal RNA methyltransferase Nop2, at 269,606 to 272,171
11645
mRNA_3278: 11646 - K14152 HIS4 phosphoribosyl-ATP pyrophosphohydrolase / phosphoribosyl-AMP cyclohydrolase / histidinol dehydrogenase, at 272,416 to 277,579
11646
Group
Condition
mRNA
_3274
mRNA
_3275
mRNA
_3276
mRNA
_3277
mRNA
_3278
11642
11643
11644
11645
11646
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
-0.0
-0.5
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.3
+0.1
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.1
+0.0
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.2
-0.0
N.D.
+0.1
growth on oleic acid
YNB Oleic Acid
-0.1
-0.1
-0.1
N.D.
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-0.3
+0.2
N.D.
+0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.1
+0.2
N.D.
-0.0
growth on oleic acid
YNB Glucose
+0.0
-0.0
+0.0
N.D.
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
-0.1
-0.1
N.D.
+0.2
growth on ricinoleic acid
YNB Glucose
+0.1
+0.0
-0.2
N.D.
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.1
+0.0
N.D.
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.2
+0.4
N.D.
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.4
+0.2
-0.0
N.D.
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.4
+0.1
+0.0
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.1
-0.2
N.D.
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.1
+0.1
N.D.
-0.1
auxotrophy
Dropout Complete
+0.1
+0.1
+0.1
N.D.
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.0
+0.2
+0.1
N.D.
+0.3
growth on ypd
YPD
+0.5
+0.1
+0.1
N.D.
-0.0
auxotrophy
YNB Glucose
+0.1
+0.2
+0.0
N.D.
+0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.0
+0.2
+0.3
N.D.
+0.4
remove
mRNA_3274
plot
remove
mRNA_3275
plot
remove
mRNA_3276
remove
mRNA_3277
plot
remove
mRNA_3278
plot