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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11646 and 11647 are separated by 733 nucleotides
11647 and 11648 are separated by 1011 nucleotides
11648 and 11649 are separated by 215 nucleotides
11649 and 11650 are separated by 475 nucleotides
mRNA_3278: 11646 - K14152 HIS4 phosphoribosyl-ATP pyrophosphohydrolase / phosphoribosyl-AMP cyclohydrolase / histidinol dehydrogenase, at 272,416 to 277,579
11646
mRNA_3279: 11647 - HMMPfam-Beta-glucan synthesis-associated protein (SKN1)-PF03935,SUPERFAMILY--SSF49899, at 278,313 to 280,858
11647
mRNA_3280: 11648 - Hypothetical Protein, at 281,870 to 282,355
11648
mRNA_3281: 11649 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 282,571 to 284,691
11649
mRNA_3282: 11650 - KOG0023 Alcohol dehydrogenase, class V, at 285,167 to 286,436
11650
Group
Condition
mRNA
_3278
mRNA
_3279
mRNA
_3280
mRNA
_3281
mRNA
_3282
11646
11647
11648
11649
11650
ypd buoyancy
40 hrs Median Buoyancy
-0.2
N.D.
-0.2
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
N.D.
-0.0
-0.2
-0.6
growth on ypd
YPD
-0.0
N.D.
+0.1
-0.4
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
N.D.
-0.2
+0.3
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.3
N.D.
-0.1
+0.1
+0.3
auxotrophy
Dropout Complete
+0.3
N.D.
-0.2
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
N.D.
+0.3
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
N.D.
+0.2
+0.2
-0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.4
N.D.
-0.1
+0.1
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
N.D.
+0.1
+0.5
-0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.3
N.D.
-0.2
+0.3
-0.2
auxotrophy
YNB Glucose
+0.4
N.D.
-0.2
+0.2
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
N.D.
+0.1
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
N.D.
+0.2
+0.3
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
N.D.
+0.6
-0.3
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
N.D.
+0.5
-0.3
+0.3
growth on oleic acid
YNB Oleic Acid
+0.2
N.D.
-0.0
+0.2
+0.2
growth on ricinoleic acid
YNB Glucose
+0.1
N.D.
+0.2
+0.2
+0.2
growth on oleic acid
YNB Glucose
-0.1
N.D.
+0.1
+0.6
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
N.D.
+0.5
+0.1
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
N.D.
+0.3
+0.2
+0.4
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