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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11649 and 11650 are separated by 475 nucleotides
11650 and 11651 are separated by 598 nucleotides
11651 and 11652 are separated by 128 nucleotides
11652 and 11653 are separated by 620 nucleotides
mRNA_3281: 11649 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 282,571 to 284,691
11649
mRNA_3282: 11650 - KOG0023 Alcohol dehydrogenase, class V, at 285,167 to 286,436
11650
mRNA_3283: 11651 - K20224 IPO9, RANBP9 importin-9, at 287,035 to 291,052
11651
mRNA_3284: 11652 - BLAST something about silencing, SAS, complex subunit 4 [Rh..., at 291,181 to 293,324
11652
mRNA_3285: 11653 - KOG2069 Golgi transport complex subunit, at 293,945 to 296,560
11653
Group
Condition
mRNA
_3281
mRNA
_3282
mRNA
_3283
mRNA
_3284
mRNA
_3285
11649
11650
11651
11652
11653
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.3
N.D.
-1.3
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.1
N.D.
-0.6
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.6
N.D.
+0.3
+0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
N.D.
-0.0
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.4
N.D.
-0.6
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.2
N.D.
+0.4
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.4
N.D.
+0.3
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.3
N.D.
-0.1
+0.6
auxotrophy
YNB Glucose
+0.2
-0.1
N.D.
-0.2
+0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.2
N.D.
+0.4
+0.1
auxotrophy
Dropout Complete
+0.1
-0.2
N.D.
-0.4
+1.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.3
N.D.
+0.2
+0.2
growth on ypd
YPD
-0.4
+0.1
N.D.
+0.1
+1.0
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.2
N.D.
+0.0
+0.7
growth on ricinoleic acid
YNB Glucose
+0.2
+0.2
N.D.
-0.1
+0.9
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.1
N.D.
+0.4
+0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.0
N.D.
+0.4
+1.6
growth on oleic acid
YNB Glucose
+0.6
+0.1
N.D.
+0.1
+1.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
+0.1
N.D.
+0.1
+1.5
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
-0.3
N.D.
+0.9
+0.6
growth on oleic acid
YNB Oleic Acid
+0.2
+0.2
N.D.
+0.1
+1.3
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