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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11656 and 11657 are separated by 296 nucleotides
11657 and 11658 are separated by 2423 nucleotides
11658 and 11659 are separated by 364 nucleotides
11659 and 11660 are separated by 584 nucleotides
mRNA_3288: 11656 - K03240 EIF2B5 translation initiation factor eIF-2B subunit epsilon, at 298,551 to 301,179
11656
mRNA_3289: 11657 - ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 301,476 to 302,545
11657
mRNA_3290: 11658 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 304,969 to 308,540
11658
mRNA_3291: 11659 - BLAST expressed protein [Schizophyllum commune H4-8], at 308,905 to 310,428
11659
mRNA_3292: 11660 - KOG1339 Aspartyl protease, at 311,013 to 311,790
11660
Group
Condition
mRNA
_3288
mRNA
_3289
mRNA
_3290
mRNA
_3291
mRNA
_3292
11656
11657
11658
11659
11660
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.7
+0.0
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
-1.0
+0.2
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.6
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.5
+0.1
-0.2
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.7
-0.0
+0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-0.4
-0.0
+0.1
auxotrophy
YNB Glucose
N.D.
N.D.
-0.3
+0.2
-0.0
auxotrophy
Dropout Complete
N.D.
N.D.
-0.1
+0.0
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-0.1
-0.1
+0.3
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-0.5
+0.3
+0.3
growth on ypd
YPD
N.D.
N.D.
+0.1
-0.0
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.4
+0.2
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.3
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
-0.2
+0.3
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-0.4
+0.3
+0.3
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
-0.3
+0.4
+0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.2
+0.1
-0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.2
+0.2
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.2
+0.0
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-0.2
+0.3
+0.3
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
+0.1
+0.2
+0.2
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