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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11658 and 11659 are separated by 364 nucleotides
11659 and 11660 are separated by 584 nucleotides
11660 and 11661 are separated by 6412 nucleotides
11661 and 11662 are separated by 13 nucleotides
mRNA_3290: 11658 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 304,969 to 308,540
11658
mRNA_3291: 11659 - BLAST expressed protein [Schizophyllum commune H4-8], at 308,905 to 310,428
11659
mRNA_3292: 11660 - KOG1339 Aspartyl protease, at 311,013 to 311,790
11660
mRNA_3293: 11661 - K01440 PNC1 nicotinamidase, at 318,203 to 319,692
11661
mRNA_3294: 11662 - K20368 CNIH, ERV14 protein cornichon, at 319,706 to 321,575
11662
Group
Condition
mRNA
_3290
mRNA
_3291
mRNA
_3292
mRNA
_3293
mRNA
_3294
11658
11659
11660
11661
11662
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-1.0
+0.2
-0.1
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.7
+0.0
-0.3
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
+0.1
-0.2
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.6
-0.2
-0.1
+0.3
N.D.
growth on oleic acid
YNB Glucose
-0.7
-0.0
+0.2
+0.2
N.D.
growth on ricinoleic acid
YNB Glucose
-0.5
+0.3
+0.3
-0.4
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
+0.3
+0.3
-0.3
N.D.
growth on oleic acid
YNB Oleic Acid
-0.3
+0.4
+0.1
-0.3
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.1
+0.3
-0.1
N.D.
growth on ypd
YPD
+0.1
-0.0
+0.0
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.4
-0.0
+0.1
+0.3
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+0.2
+0.3
-0.2
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.3
+0.3
-0.4
N.D.
auxotrophy
Dropout Complete
-0.1
+0.0
-0.1
+0.2
N.D.
auxotrophy
YNB Glucose
-0.3
+0.2
-0.0
+0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.1
-0.0
-0.2
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
+0.2
+0.3
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.3
+0.1
+0.0
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.2
-0.0
-0.0
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.2
+0.2
-0.1
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
+0.0
+0.2
+0.2
N.D.
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