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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11667 and 11668 are separated by 160 nucleotides
11668 and 11669 are separated by 253 nucleotides
11669 and 11670 are separated by 1362 nucleotides
11670 and 11671 are separated by 4994 nucleotides
mRNA_3299: 11667 - K19704 PTC1 protein phosphatase PTC1, at 333,758 to 335,633
11667
mRNA_3300: 11668 - HMMPfam-Amidohydrolase-PF13147,SUPERFAMILY--SSF51338,SUPERFAMILY--SSF51556, at 335,794 to 339,454
11668
mRNA_3301: 11669 - K08197 ARN MFS transporter, SIT family, siderophore-iron-H+ symporter, at 339,708 to 341,858
11669
mRNA_3302: 11670 - K07232 chaC cation transport protein ChaC, at 343,221 to 344,290
11670
mRNA_3303: 11671 - K03249 EIF3F translation initiation factor 3 subunit F, at 349,285 to 350,385
11671
Group
Condition
mRNA
_3299
mRNA
_3300
mRNA
_3301
mRNA
_3302
mRNA
_3303
11667
11668
11669
11670
11671
ypd buoyancy
40 hrs No Buoyancy Separation
-1.2
+0.2
+0.3
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.6
-0.0
+0.4
-0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.2
-0.5
+0.4
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.1
+0.1
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.1
-0.1
+0.0
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.1
+0.0
-0.0
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.1
-0.0
+0.3
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.2
+0.0
+0.4
N.D.
growth on ypd
YPD
+0.5
-0.1
-0.4
+0.5
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.1
+0.3
+0.6
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
+0.0
-0.1
+0.4
N.D.
growth on oleic acid
YNB Glucose
+0.5
-0.3
-0.0
+0.8
N.D.
auxotrophy
YNB Glucose
+0.4
+0.2
-0.0
+0.9
N.D.
growth on ricinoleic acid
YNB Glucose
+0.4
+0.0
-0.1
+1.1
N.D.
auxotrophy
Dropout Complete
+0.5
+0.1
-0.1
+1.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.4
+0.2
+0.0
+1.0
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.4
+0.2
+0.1
+1.1
N.D.
growth on oleic acid
YNB Oleic Acid
+0.5
-0.0
-0.1
+1.6
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.0
+0.1
+2.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.9
+0.1
+0.3
+1.3
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
-0.1
+0.1
+2.5
N.D.
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