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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11675 and 11676 are separated by 786 nucleotides
11676 and 11677 are separated by 603 nucleotides
11677 and 11678 are separated by 1337 nucleotides
11678 and 11679 are separated by 139 nucleotides
mRNA_3307: 11675 - K06268 PPP3R, CNB serine/threonine-protein phosphatase 2B regulatory subunit, at 355,687 to 356,880
11675
mRNA_3308: 11676 - KOG2533 Permease of the major facilitator superfamily, at 357,667 to 359,935
11676
mRNA_3309: 11677 - HMMPfam-Amidohydrolase family-PF01979,SUPERFAMILY--SSF51338,SUPERFAMILY--SSF51556, at 360,539 to 362,421
11677
mRNA_3310: 11678 - HMMPfam-Fungal specific transcription factor domain-PF04082,SMART-Fungal specific transcription factor domain-SM00906, at 363,759 to 365,853
11678
mRNA_3311: 11679 - K00134 GAPDH, gapA glyceraldehyde 3-phosphate dehydrogenase, at 365,993 to 367,448
11679
Group
Condition
mRNA
_3307
mRNA
_3308
mRNA
_3309
mRNA
_3310
mRNA
_3311
11675
11676
11677
11678
11679
ypd buoyancy
40 hrs No Buoyancy Separation
-1.4
-0.3
-0.9
-0.2
-0.8
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.0
-0.7
-0.0
+0.2
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.5
+0.2
+0.0
-0.7
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.5
+0.0
+0.0
-0.0
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.5
-0.1
-0.1
+0.0
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.6
-0.1
-0.2
+0.3
+0.1
growth on ypd
YPD
+0.2
+0.0
-0.1
-0.1
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
-0.2
+0.2
-0.5
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.5
+0.3
+0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.9
+0.1
-0.1
-0.2
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.8
-0.3
-0.0
-0.2
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
+0.1
+0.1
-0.0
+0.2
growth on oleic acid
YNB Glucose
+1.6
-0.2
+0.1
-0.3
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+1.8
+0.1
-0.1
-0.2
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+1.6
-0.1
+0.1
+0.0
+0.0
auxotrophy
Dropout Complete
+1.9
-0.1
-0.0
+0.0
-0.1
growth on oleic acid
YNB Oleic Acid
+2.4
+0.0
-0.2
-0.0
-0.3
auxotrophy
YNB Glucose
+1.9
+0.2
+0.1
-0.1
+0.2
growth on ricinoleic acid
YNB Glucose
+2.3
-0.4
+0.1
+0.2
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+3.4
-0.3
-0.4
+0.6
-0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
+3.6
-0.7
+0.0
+0.4
-0.2
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