Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 11678 and 11679 are separated by 139 nucleotides11679 and 11680 are separated by 375 nucleotides11680 and 11681 are separated by 1216 nucleotides11681 and 11682 are separated by 179 nucleotides mRNA_3310: 11678 - HMMPfam-Fungal specific transcription factor domain-PF04082,SMART-Fungal specific transcription factor domain-SM00906, at 363,759 to 365,853 11678 mRNA_3311: 11679 - K00134 GAPDH, gapA glyceraldehyde 3-phosphate dehydrogenase, at 365,993 to 367,448 11679 mRNA_3312: 11680 - Hypothetical Protein, at 367,824 to 368,675 11680 mRNA_3313: 11681 - K00030 IDH3 isocitrate dehydrogenase (NAD+), at 369,892 to 372,180 11681 mRNA_3314: 11682 - K00030 IDH3 isocitrate dehydrogenase (NAD+), at 372,360 to 374,414 11682
Group Condition mRNA_3310 mRNA_3311 mRNA_3312 mRNA_3313 mRNA_3314
11678 11679 11680 11681 11682
ypd buoyancy 40 hrs No Buoyancy Separation -0.2 -0.8 -3.3 -2.2 N.D.
growth on ypd YPD -0.1 -0.4 -0.6 -1.7 N.D.
auxotrophy Dropout Complete +0.0 -0.1 -0.5 -1.6 N.D.
growth on ricinoleic acid YNB Glucose +0.2 +0.1 +0.5 -2.8 N.D.
ypd buoyancy 40 hrs High Buoyancy -0.7 +0.1 -0.3 -0.8 N.D.
auxotrophy YNB Glucose 75mM Arginine -0.2 -0.2 -0.1 -1.2 N.D.
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.0 +0.2 +0.9 -2.7 N.D.
auxotrophy YNB Glucose 75mM Methionine +0.0 +0.0 -0.5 -1.1 N.D.
auxotrophy YNB Glucose -0.1 +0.2 -0.8 -0.7 N.D.
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.5 +0.1 +1.2 -1.5 N.D.
facs on lipid accumulation Sorted High BODIPY Gate +0.1 +0.1 +0.1 -1.1 N.D.
growth on ricinoleic acid YNB Ricinoleic Acid +0.6 -0.5 +0.8 -1.5 N.D.
growth on oleic acid YNB Oleic Acid -0.0 -0.3 -0.3 -0.0 N.D.
growth on oleic acid YNB Glucose -0.3 -0.1 +0.2 -0.5 N.D.
growth on ricinoleic acid YNB Methylricinoleic Acid +0.4 -0.2 +0.3 -1.0 N.D.
ypd buoyancy 40 hrs Median Buoyancy -0.0 -0.4 +0.2 -0.3 N.D.
ypd buoyancy 40 hrs Low Buoyancy -0.2 -0.0 +0.1 -0.3 N.D.
facs on lipid accumulation Sorted No BODIPY Gate +0.3 +0.1 +0.5 -1.0 N.D.
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.0 +0.2 +0.7 -0.6 N.D.
facs on lipid accumulation Sorted Low BODIPY Gate +0.2 -0.2 +0.3 +0.5 N.D.
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.2 +0.3 +1.0 -0.0 N.D.
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