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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11679 and 11680 are separated by 375 nucleotides
11680 and 11681 are separated by 1216 nucleotides
11681 and 11682 are separated by 179 nucleotides
11682 and 11683 are separated by 920 nucleotides
mRNA_3311: 11679 - K00134 GAPDH, gapA glyceraldehyde 3-phosphate dehydrogenase, at 365,993 to 367,448
11679
mRNA_3312: 11680 - Hypothetical Protein, at 367,824 to 368,675
11680
mRNA_3313: 11681 - K00030 IDH3 isocitrate dehydrogenase (NAD+), at 369,892 to 372,180
11681
mRNA_3314: 11682 - K00030 IDH3 isocitrate dehydrogenase (NAD+), at 372,360 to 374,414
11682
mRNA_3315: 11683 - K18637 AXL2 axial budding pattern protein 2, at 375,335 to 379,207
11683
Group
Condition
mRNA
_3311
mRNA
_3312
mRNA
_3313
mRNA
_3314
mRNA
_3315
11679
11680
11681
11682
11683
ypd buoyancy
40 hrs No Buoyancy Separation
-0.8
-3.3
-2.2
N.D.
+0.1
growth on ypd
YPD
-0.4
-0.6
-1.7
N.D.
-0.2
auxotrophy
Dropout Complete
-0.1
-0.5
-1.6
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.1
-1.2
N.D.
-0.4
growth on ricinoleic acid
YNB Glucose
+0.1
+0.5
-2.8
N.D.
+0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.5
-1.1
N.D.
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.1
-1.1
N.D.
-0.6
auxotrophy
YNB Glucose
+0.2
-0.8
-0.7
N.D.
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
+0.8
-1.5
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.9
-2.7
N.D.
+0.8
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.3
-0.8
N.D.
+0.2
growth on oleic acid
YNB Oleic Acid
-0.3
-0.3
-0.0
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+1.2
-1.5
N.D.
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.5
-1.0
N.D.
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.3
-1.0
N.D.
+0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.4
+0.2
-0.3
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.7
-0.6
N.D.
-0.4
growth on oleic acid
YNB Glucose
-0.1
+0.2
-0.5
N.D.
+0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.1
-0.3
N.D.
+0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.3
+0.5
N.D.
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+1.0
-0.0
N.D.
+0.0
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