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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11681 and 11682 are separated by 179 nucleotides
11682 and 11683 are separated by 920 nucleotides
11683 and 11684 are separated by 366 nucleotides
11684 and 11685 are separated by 257 nucleotides
mRNA_3313: 11681 - K00030 IDH3 isocitrate dehydrogenase (NAD+), at 369,892 to 372,180
11681
mRNA_3314: 11682 - K00030 IDH3 isocitrate dehydrogenase (NAD+), at 372,360 to 374,414
11682
mRNA_3315: 11683 - K18637 AXL2 axial budding pattern protein 2, at 375,335 to 379,207
11683
mRNA_3316: 11684 - K15223 UAF30, SPP27 upstream activation factor subunit UAF30, at 379,574 to 381,154
11684
mRNA_3317: 11685 - SUPERFAMILY--SSF52540, at 381,412 to 382,785
11685
Group
Condition
mRNA
_3313
mRNA
_3314
mRNA
_3315
mRNA
_3316
mRNA
_3317
11681
11682
11683
11684
11685
ypd buoyancy
40 hrs No Buoyancy Separation
-2.2
N.D.
+0.1
-0.6
+0.0
growth on ricinoleic acid
YNB Glucose
-2.8
N.D.
+0.4
+0.3
-0.3
growth on ypd
YPD
-1.7
N.D.
-0.2
-0.2
-0.0
auxotrophy
Dropout Complete
-1.6
N.D.
-0.1
-0.1
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-2.7
N.D.
+0.8
+0.1
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.5
N.D.
+0.4
-0.2
-0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.5
N.D.
-0.4
+0.4
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-1.1
N.D.
-0.6
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-1.2
N.D.
-0.4
+0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-1.0
N.D.
-0.3
+0.1
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-1.1
N.D.
-0.1
+0.0
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.6
N.D.
-0.4
-0.1
-0.2
auxotrophy
YNB Glucose
-0.7
N.D.
+0.1
-0.1
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.8
N.D.
+0.2
+0.1
-0.2
growth on oleic acid
YNB Oleic Acid
-0.0
N.D.
-0.1
-0.4
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.0
N.D.
+0.4
+0.4
-0.2
growth on oleic acid
YNB Glucose
-0.5
N.D.
+0.3
-0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.3
N.D.
+0.4
+0.1
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.3
N.D.
+0.3
+0.0
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
N.D.
+0.0
+0.3
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
N.D.
+0.5
-0.0
+0.2
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