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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11684 and 11685 are separated by 257 nucleotides
11685 and 11686 are separated by 919 nucleotides
11686 and 11687 are separated by 214 nucleotides
11687 and 11688 are separated by 155 nucleotides
mRNA_3316: 11684 - K15223 UAF30, SPP27 upstream activation factor subunit UAF30, at 379,574 to 381,154
11684
mRNA_3317: 11685 - SUPERFAMILY--SSF52540, at 381,412 to 382,785
11685
mRNA_3318: 11686 - K14640 SLC20A, PIT solute carrier family 20 (sodium-dependent phosphate transporter), at 383,705 to 386,213
11686
mRNA_3319: 11687 - KOG3854 SPRT-like metalloprotease, at 386,428 to 389,154
11687
mRNA_3320: 11688 - KOG2493 Na+/Pi symporter, at 389,310 to 390,792
11688
Group
Condition
mRNA
_3316
mRNA
_3317
mRNA
_3318
mRNA
_3319
mRNA
_3320
11684
11685
11686
11687
11688
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.6
-0.7
-0.3
-0.3
growth on oleic acid
YNB Oleic Acid
-0.4
-0.1
-0.1
-0.2
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.2
-0.5
+0.1
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
+0.2
-0.4
-0.3
-0.3
auxotrophy
Dropout Complete
-0.1
-0.4
+0.2
-0.1
-0.4
growth on ricinoleic acid
YNB Glucose
+0.3
-0.3
-0.0
-0.2
-0.6
auxotrophy
YNB Glucose
-0.1
-0.3
+0.2
-0.1
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
+0.0
-0.2
-0.1
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
-0.2
-0.2
-0.1
-0.5
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.2
-0.2
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.1
+0.0
-0.1
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.1
-0.2
-0.3
-0.2
growth on ypd
YPD
-0.2
-0.0
+0.1
+0.1
-0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.1
+0.2
+0.1
-0.5
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.2
-0.1
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
-0.2
-0.3
+0.3
-0.4
growth on oleic acid
YNB Glucose
-0.1
+0.1
+0.2
-0.0
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.3
-0.1
+0.0
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.2
+0.0
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.2
+0.2
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.1
-0.1
+0.3
+0.1
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