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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11687 and 11688 are separated by 155 nucleotides
11688 and 11689 are separated by 507 nucleotides
11689 and 11690 are separated by 1283 nucleotides
11690 and 11691 are separated by 295 nucleotides
mRNA_3319: 11687 - KOG3854 SPRT-like metalloprotease, at 386,428 to 389,154
11687
mRNA_3320: 11688 - KOG2493 Na+/Pi symporter, at 389,310 to 390,792
11688
mRNA_3321: 11689 - Hypothetical Protein, at 391,300 to 392,689
11689
mRNA_3322: 11690 - HMMPfam-Ribosomal RNA-processing protein 7 (RRP7)-PF12923, at 393,973 to 395,198
11690
mRNA_3323: 11691 - HMMPfam-RTA1 like protein-PF04479, at 395,494 to 396,830
11691
Group
Condition
mRNA
_3319
mRNA
_3320
mRNA
_3321
mRNA
_3322
mRNA
_3323
11687
11688
11689
11690
11691
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.4
+0.0
-0.4
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.5
-0.2
+0.0
-0.0
growth on oleic acid
YNB Oleic Acid
-0.2
-0.4
+0.2
-0.2
+0.0
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.1
-0.0
-0.1
-0.3
auxotrophy
YNB Glucose
-0.1
-0.4
+0.0
-0.3
+0.3
growth on oleic acid
YNB Glucose
-0.0
-0.4
+0.2
-0.1
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.1
-0.1
-0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.2
+0.1
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.4
+0.1
-0.2
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.2
+0.1
+0.1
-0.1
auxotrophy
Dropout Complete
-0.1
-0.4
+0.3
-0.2
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.3
-0.4
+0.5
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.1
-0.1
-0.1
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.0
-0.1
+0.2
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.5
+0.1
+0.3
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.3
+0.4
+0.2
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.2
+0.1
-0.3
+0.4
growth on ricinoleic acid
YNB Glucose
-0.2
-0.6
+0.2
+0.8
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.3
+0.5
+0.4
+0.3
growth on ypd
YPD
+0.1
-0.3
+0.0
+0.8
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
+0.1
+0.2
+0.4
+0.0
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