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Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11690 and 11691 are separated by 295 nucleotides
11691 and 11692 are separated by 407 nucleotides
11692 and 11693 are separated by 176 nucleotides
11693 and 11694 are separated by 825 nucleotides
mRNA_3322: 11690 - HMMPfam-Ribosomal RNA-processing protein 7 (RRP7)-PF12923, at 393,973 to 395,198
11690
mRNA_3323: 11691 - HMMPfam-RTA1 like protein-PF04479, at 395,494 to 396,830
11691
mRNA_3324: 11692 - HMMPfam-RTA1 like protein-PF04479, at 397,238 to 398,541
11692
mRNA_3325: 11693 - Hypothetical Protein, at 398,718 to 399,832
11693
mRNA_3326: 11694 - BLAST allergen [Malassezia sympodialis ATCC 42132], at 400,658 to 402,328
11694
Group
Condition
mRNA
_3322
mRNA
_3323
mRNA
_3324
mRNA
_3325
mRNA
_3326
11690
11691
11692
11693
11694
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.1
-0.9
-1.3
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.4
-1.1
-0.9
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.4
-0.6
-1.1
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.2
-0.7
-1.2
-0.1
auxotrophy
YNB Glucose
-0.3
+0.3
-0.5
-0.3
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
+0.4
-0.2
-0.6
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.3
-0.2
+0.2
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.1
-0.2
-0.3
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.1
-0.6
+0.2
+0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.3
+0.0
+0.2
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.4
+0.2
-0.0
+0.1
+0.0
auxotrophy
Dropout Complete
-0.2
+0.2
-0.2
+0.2
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
+0.3
-0.2
-0.2
-0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.0
-0.2
+0.4
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
+0.2
+0.1
-0.1
-0.1
growth on oleic acid
YNB Glucose
-0.1
-0.2
+0.4
+0.9
-0.4
growth on ricinoleic acid
YNB Glucose
+0.8
+0.1
+0.1
-0.3
-0.0
growth on ypd
YPD
+0.8
-0.0
+0.4
+0.1
-0.3
growth on oleic acid
YNB Oleic Acid
-0.2
+0.0
+0.5
+0.8
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
+0.3
+0.1
+0.0
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
+0.0
-0.0
+1.1
+0.2
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