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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11696 and 11697 are separated by 350 nucleotides
11697 and 11698 are separated by 556 nucleotides
11698 and 11699 are separated by 430 nucleotides
11699 and 11700 are separated by 1061 nucleotides
mRNA_3328: 11696 - BLAST YALIA101S10e03422g1_1 [Yarrowia lipolytica], at 404,411 to 405,058
11696
mRNA_3329: 11697 - Hypothetical Protein, at 405,409 to 406,722
11697
mRNA_3330: 11698 - Hypothetical Protein, at 407,279 to 408,287
11698
mRNA_3331: 11699 - Hypothetical Protein, at 408,718 to 409,947
11699
mRNA_3332: 11700 - K17424 MRPL43 large subunit ribosomal protein L43, at 411,009 to 411,517
11700
Group
Condition
mRNA
_3328
mRNA
_3329
mRNA
_3330
mRNA
_3331
mRNA
_3332
11696
11697
11698
11699
11700
ypd buoyancy
40 hrs No Buoyancy Separation
-1.1
-1.2
-0.6
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-1.0
+0.2
-0.7
N.D.
N.D.
growth on ypd
YPD
-1.0
+0.2
-0.6
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.6
-0.2
-0.5
N.D.
N.D.
auxotrophy
Dropout Complete
-0.8
+0.5
-0.8
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.4
-0.6
-0.1
N.D.
N.D.
auxotrophy
YNB Glucose
-0.7
+0.4
-0.6
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+0.3
-0.7
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
-0.3
+0.1
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.5
-0.1
-0.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
-0.1
+0.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.3
-0.4
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+0.4
-0.2
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.6
-0.7
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
+0.1
-0.1
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
-0.1
-0.0
N.D.
N.D.
growth on oleic acid
YNB Glucose
+0.9
-0.0
-0.0
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+0.5
+0.4
+0.2
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.8
-0.0
+0.4
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
+0.8
-0.1
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.5
+0.3
+0.6
N.D.
N.D.
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