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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11702 and 11703 are separated by 114 nucleotides
11703 and 11704 are separated by 139 nucleotides
11704 and 11705 are separated by 307 nucleotides
11705 and 11706 are separated by 1264 nucleotides
mRNA_3334: 11702 - K03936 NDUFS3 NADH dehydrogenase (ubiquinone) Fe-S protein 3, at 413,797 to 414,963
11702
mRNA_3335: 11703 - Hypothetical Protein, at 415,078 to 415,551
11703
mRNA_3336: 11704 - K07827 KRAS, KRAS2 GTPase KRas, at 415,691 to 416,703
11704
mRNA_3337: 11705 - KOG3336 Predicted member of the intramitochondrial sorting protein family, at 417,011 to 417,925
11705
mRNA_3338: 11706 - KOG3525 Subtilisin-like proprotein convertase, at 419,190 to 423,102
11706
Group
Condition
mRNA
_3334
mRNA
_3335
mRNA
_3336
mRNA
_3337
mRNA
_3338
11702
11703
11704
11705
11706
growth on oleic acid
YNB Oleic Acid
N.D.
-0.1
-0.3
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.3
-0.3
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.3
+0.1
N.D.
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.1
-0.2
N.D.
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.6
+0.0
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.1
-0.2
N.D.
-0.1
growth on oleic acid
YNB Glucose
N.D.
+0.0
-0.2
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.4
-0.4
N.D.
-0.3
growth on ypd
YPD
N.D.
+0.1
-0.3
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
+0.0
N.D.
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.2
+0.2
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.4
-0.0
N.D.
-0.5
auxotrophy
YNB Glucose
N.D.
+0.6
-0.2
N.D.
-0.5
auxotrophy
Dropout Complete
N.D.
+0.6
-0.2
N.D.
-0.5
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
-0.1
N.D.
+0.0
growth on ricinoleic acid
YNB Glucose
N.D.
+0.3
+0.1
N.D.
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.5
-0.3
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.1
-0.0
N.D.
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.3
+0.0
N.D.
-0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.3
-0.1
N.D.
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.4
+0.1
N.D.
+0.2
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