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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11703 and 11704 are separated by 139 nucleotides
11704 and 11705 are separated by 307 nucleotides
11705 and 11706 are separated by 1264 nucleotides
11706 and 11707 are separated by 333 nucleotides
mRNA_3335: 11703 - Hypothetical Protein, at 415,078 to 415,551
11703
mRNA_3336: 11704 - K07827 KRAS, KRAS2 GTPase KRas, at 415,691 to 416,703
11704
mRNA_3337: 11705 - KOG3336 Predicted member of the intramitochondrial sorting protein family, at 417,011 to 417,925
11705
mRNA_3338: 11706 - KOG3525 Subtilisin-like proprotein convertase, at 419,190 to 423,102
11706
mRNA_3339: 11707 - KOG2445 Nuclear pore complex component (sc Seh1), at 423,436 to 425,345
11707
Group
Condition
mRNA
_3335
mRNA
_3336
mRNA
_3337
mRNA
_3338
mRNA
_3339
11703
11704
11705
11706
11707
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
-0.3
N.D.
+0.0
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
+0.0
N.D.
+0.0
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
+0.1
N.D.
-0.4
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.2
N.D.
-0.1
-0.1
growth on oleic acid
YNB Glucose
+0.0
-0.2
N.D.
-0.2
-0.0
growth on oleic acid
YNB Oleic Acid
-0.1
-0.3
N.D.
-0.1
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.4
-0.4
N.D.
-0.3
+0.1
growth on ypd
YPD
+0.1
-0.3
N.D.
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.0
N.D.
-0.1
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.0
N.D.
-0.2
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.4
-0.0
N.D.
-0.5
+0.1
auxotrophy
YNB Glucose
+0.6
-0.2
N.D.
-0.5
+0.2
auxotrophy
Dropout Complete
+0.6
-0.2
N.D.
-0.5
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.2
N.D.
-0.2
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.5
-0.3
N.D.
-0.2
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.3
-0.1
N.D.
-0.1
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.2
N.D.
-0.3
+0.7
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.1
N.D.
+0.0
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
+0.1
N.D.
+0.2
-0.4
growth on ricinoleic acid
YNB Glucose
+0.3
+0.1
N.D.
-0.4
+0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
+0.0
N.D.
-0.3
+0.7
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