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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11706 and 11707 are separated by 333 nucleotides
11707 and 11708 are separated by 243 nucleotides
11708 and 11709 are separated by 246 nucleotides
11709 and 11710 are separated by 578 nucleotides
mRNA_3338: 11706 - KOG3525 Subtilisin-like proprotein convertase, at 419,190 to 423,102
11706
mRNA_3339: 11707 - KOG2445 Nuclear pore complex component (sc Seh1), at 423,436 to 425,345
11707
mRNA_3340: 11708 - K20523 SH3YL1 SH3 domain-containing YSC84-like protein 1, at 425,589 to 428,080
11708
mRNA_3341: 11709 - K20724 TMEM33 transmembrane protein 33, at 428,327 to 429,727
11709
mRNA_3342: 11710 - PRINTS-Proline rich extensin signature-PR01217, at 430,306 to 432,208
11710
Group
Condition
mRNA
_3338
mRNA
_3339
mRNA
_3340
mRNA
_3341
mRNA
_3342
11706
11707
11708
11709
11710
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.4
-0.7
+0.2
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
-0.1
-0.3
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.2
-0.6
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.1
-0.7
+0.2
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.1
-0.4
+0.2
-0.0
auxotrophy
YNB Glucose
-0.5
+0.2
-0.4
+0.1
+0.1
auxotrophy
Dropout Complete
-0.5
+0.2
-0.4
+0.2
+0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.0
-0.0
-0.2
-0.1
growth on oleic acid
YNB Glucose
-0.2
-0.0
-0.3
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.5
+0.1
-0.4
+0.4
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.1
-0.1
+0.2
-0.1
growth on oleic acid
YNB Oleic Acid
-0.1
+0.3
-0.4
+0.0
+0.2
growth on ypd
YPD
-0.1
+0.0
+0.0
+0.4
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.2
-0.1
+0.3
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.2
-0.1
-0.0
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
+0.7
-0.8
+0.3
+0.5
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.1
-0.3
+0.2
+0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+0.7
-0.3
+0.4
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.3
+0.0
+0.1
+0.1
growth on ricinoleic acid
YNB Glucose
-0.4
+0.6
+0.0
+0.3
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-0.2
+0.2
+0.8
+0.4
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