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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11707 and 11708 are separated by 243 nucleotides
11708 and 11709 are separated by 246 nucleotides
11709 and 11710 are separated by 578 nucleotides
11710 and 11711 are separated by 1508 nucleotides
mRNA_3339: 11707 - KOG2445 Nuclear pore complex component (sc Seh1), at 423,436 to 425,345
11707
mRNA_3340: 11708 - K20523 SH3YL1 SH3 domain-containing YSC84-like protein 1, at 425,589 to 428,080
11708
mRNA_3341: 11709 - K20724 TMEM33 transmembrane protein 33, at 428,327 to 429,727
11709
mRNA_3342: 11710 - PRINTS-Proline rich extensin signature-PR01217, at 430,306 to 432,208
11710
mRNA_3343: 11711 - HMMPfam-alpha/beta hydrolase fold-PF07859,SUPERFAMILY--SSF53474, at 433,717 to 434,732
11711
Group
Condition
mRNA
_3339
mRNA
_3340
mRNA
_3341
mRNA
_3342
mRNA
_3343
11707
11708
11709
11710
11711
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.7
+0.2
-0.3
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.6
-0.0
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.3
-0.2
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.7
+0.2
-0.0
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.4
+0.2
-0.0
-0.3
growth on oleic acid
YNB Glucose
-0.0
-0.3
+0.1
+0.1
-0.1
auxotrophy
Dropout Complete
+0.2
-0.4
+0.2
+0.0
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.0
-0.2
-0.1
+0.1
auxotrophy
YNB Glucose
+0.2
-0.4
+0.1
+0.1
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.4
+0.4
+0.2
-0.3
growth on oleic acid
YNB Oleic Acid
+0.3
-0.4
+0.0
+0.2
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.1
+0.2
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.1
+0.3
+0.1
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.7
-0.8
+0.3
+0.5
-0.3
growth on ypd
YPD
+0.0
+0.0
+0.4
-0.3
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.0
+0.1
+0.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.1
-0.0
+0.4
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.3
+0.2
+0.6
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.7
-0.3
+0.4
-0.0
-0.1
growth on ricinoleic acid
YNB Glucose
+0.6
+0.0
+0.3
+0.2
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.2
+0.8
+0.4
-0.1
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