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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11708 and 11709 are separated by 246 nucleotides
11709 and 11710 are separated by 578 nucleotides
11710 and 11711 are separated by 1508 nucleotides
11711 and 11712 are separated by 548 nucleotides
mRNA_3340: 11708 - K20523 SH3YL1 SH3 domain-containing YSC84-like protein 1, at 425,589 to 428,080
11708
mRNA_3341: 11709 - K20724 TMEM33 transmembrane protein 33, at 428,327 to 429,727
11709
mRNA_3342: 11710 - PRINTS-Proline rich extensin signature-PR01217, at 430,306 to 432,208
11710
mRNA_3343: 11711 - HMMPfam-alpha/beta hydrolase fold-PF07859,SUPERFAMILY--SSF53474, at 433,717 to 434,732
11711
mRNA_3344: 11712 - Hypothetical Protein, at 435,281 to 435,909
11712
Group
Condition
mRNA
_3340
mRNA
_3341
mRNA
_3342
mRNA
_3343
mRNA
_3344
11708
11709
11710
11711
11712
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.2
-0.2
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.7
+0.2
-0.0
-0.2
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.4
+0.2
-0.0
-0.3
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.7
+0.2
-0.3
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.6
-0.0
-0.1
-0.0
+0.3
auxotrophy
Dropout Complete
-0.4
+0.2
+0.0
-0.2
+0.1
auxotrophy
YNB Glucose
-0.4
+0.1
+0.1
-0.2
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.4
+0.4
+0.2
-0.3
-0.1
growth on oleic acid
YNB Glucose
-0.3
+0.1
+0.1
-0.1
+0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.2
-0.1
+0.1
+0.1
growth on oleic acid
YNB Oleic Acid
-0.4
+0.0
+0.2
-0.1
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.8
+0.3
+0.5
-0.3
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+0.4
-0.0
-0.1
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.1
+0.1
-0.1
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.2
-0.1
+0.1
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.0
+0.4
-0.0
+0.1
growth on ricinoleic acid
YNB Glucose
+0.0
+0.3
+0.2
-0.2
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.3
+0.1
+0.1
+0.3
growth on ypd
YPD
+0.0
+0.4
-0.3
+0.3
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
+0.2
+0.6
-0.1
+0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.8
+0.4
-0.1
+0.4
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