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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11709 and 11710 are separated by 578 nucleotides
11710 and 11711 are separated by 1508 nucleotides
11711 and 11712 are separated by 548 nucleotides
11712 and 11713 are separated by 861 nucleotides
mRNA_3341: 11709 - K20724 TMEM33 transmembrane protein 33, at 428,327 to 429,727
11709
mRNA_3342: 11710 - PRINTS-Proline rich extensin signature-PR01217, at 430,306 to 432,208
11710
mRNA_3343: 11711 - HMMPfam-alpha/beta hydrolase fold-PF07859,SUPERFAMILY--SSF53474, at 433,717 to 434,732
11711
mRNA_3344: 11712 - Hypothetical Protein, at 435,281 to 435,909
11712
mRNA_3345: 11713 - Hypothetical Protein, at 436,771 to 439,819
11713
Group
Condition
mRNA
_3341
mRNA
_3342
mRNA
_3343
mRNA
_3344
mRNA
_3345
11709
11710
11711
11712
11713
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.2
-0.1
+0.1
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.0
-0.3
-0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.1
+0.1
+0.1
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.3
+0.2
+0.3
-0.3
growth on oleic acid
YNB Glucose
+0.1
+0.1
-0.1
+0.0
-0.1
auxotrophy
YNB Glucose
+0.1
+0.1
-0.2
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.4
+0.2
-0.3
-0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.1
-0.1
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.0
-0.2
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-0.1
-0.0
+0.3
+0.1
auxotrophy
Dropout Complete
+0.2
+0.0
-0.2
+0.1
+0.2
growth on oleic acid
YNB Oleic Acid
+0.0
+0.2
-0.1
+0.2
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.1
+0.1
+0.2
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
-0.0
-0.1
+0.2
+0.1
growth on ricinoleic acid
YNB Glucose
+0.3
+0.2
-0.2
+0.3
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
+0.4
-0.0
+0.1
+0.1
growth on ypd
YPD
+0.4
-0.3
+0.3
+0.3
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.5
-0.3
+0.4
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.1
+0.1
+0.3
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.6
-0.1
+0.5
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.8
+0.4
-0.1
+0.4
+0.1
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