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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11710 and 11711 are separated by 1508 nucleotides
11711 and 11712 are separated by 548 nucleotides
11712 and 11713 are separated by 861 nucleotides
11713 and 11714 are separated by 271 nucleotides
mRNA_3342: 11710 - PRINTS-Proline rich extensin signature-PR01217, at 430,306 to 432,208
11710
mRNA_3343: 11711 - HMMPfam-alpha/beta hydrolase fold-PF07859,SUPERFAMILY--SSF53474, at 433,717 to 434,732
11711
mRNA_3344: 11712 - Hypothetical Protein, at 435,281 to 435,909
11712
mRNA_3345: 11713 - Hypothetical Protein, at 436,771 to 439,819
11713
mRNA_3346: 11714 - K19844 BEM2 GTPase-activating protein BEM2, at 440,091 to 443,147
11714
Group
Condition
mRNA
_3342
mRNA
_3343
mRNA
_3344
mRNA
_3345
mRNA
_3346
11710
11711
11712
11713
11714
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.1
+0.1
-0.0
+0.1
growth on ypd
YPD
-0.3
+0.3
+0.3
+0.0
-0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.3
-0.1
-0.1
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.3
-0.1
-0.1
+0.4
auxotrophy
YNB Glucose
+0.1
-0.2
+0.1
-0.1
+0.0
growth on oleic acid
YNB Glucose
+0.1
-0.1
+0.0
-0.1
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.1
+0.1
-0.0
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.1
+0.2
+0.1
+0.0
auxotrophy
Dropout Complete
+0.0
-0.2
+0.1
+0.2
+0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
+0.1
-0.0
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
+0.2
+0.3
-0.3
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
-0.2
+0.1
+0.1
+0.4
growth on oleic acid
YNB Oleic Acid
+0.2
-0.1
+0.2
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.1
+0.3
+0.2
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
-0.1
+0.2
+0.1
+0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.0
+0.3
+0.1
+0.4
growth on ricinoleic acid
YNB Glucose
+0.2
-0.2
+0.3
-0.0
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
-0.0
+0.1
+0.1
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
-0.1
+0.4
+0.1
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.6
-0.1
+0.5
+0.2
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
-0.3
+0.4
-0.1
+0.8
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