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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11713 and 11714 are separated by 271 nucleotides
11714 and 11715 are separated by 1607 nucleotides
11715 and 11716 are separated by 624 nucleotides
11716 and 11717 are separated by 645 nucleotides
mRNA_3345: 11713 - Hypothetical Protein, at 436,771 to 439,819
11713
mRNA_3346: 11714 - K19844 BEM2 GTPase-activating protein BEM2, at 440,091 to 443,147
11714
mRNA_3347: 11715 - PRINTS-Proline rich extensin signature-PR01217, at 444,755 to 446,622
11715
mRNA_3348: 11716 - K09831 ERG5, CYP61A sterol 22-desaturase, at 447,247 to 449,563
11716
mRNA_3349: 11717 - K13179 DDX18, HAS1 ATP-dependent RNA helicase DDX18/HAS1, at 450,209 to 452,145
11717
Group
Condition
mRNA
_3345
mRNA
_3346
mRNA
_3347
mRNA
_3348
mRNA
_3349
11713
11714
11715
11716
11717
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.1
-0.5
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.1
-0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.1
-0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.1
-0.2
N.D.
N.D.
auxotrophy
YNB Glucose
-0.1
+0.0
-0.1
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.0
-0.1
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
+0.5
-0.2
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.2
-0.1
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.0
-0.0
N.D.
N.D.
auxotrophy
Dropout Complete
+0.2
+0.3
-0.3
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.1
+0.0
N.D.
N.D.
growth on oleic acid
YNB Glucose
-0.1
+0.2
+0.2
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
-0.0
+0.4
-0.1
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.4
+0.0
N.D.
N.D.
growth on ypd
YPD
+0.0
-0.3
+0.7
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.5
-0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.4
-0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.4
-0.1
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.0
+0.1
+0.4
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.2
+0.4
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.8
-0.1
N.D.
N.D.
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