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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11722 and 11723 are separated by 649 nucleotides
11723 and 11724 are separated by 448 nucleotides
11724 and 11725 are separated by 182 nucleotides
11725 and 11726 are separated by 792 nucleotides
mRNA_3354: 11722 - KOG2395 Protein involved in vacuole import and degradation, at 478,400 to 482,104
11722
mRNA_3355: 11723 - K01126 E3.1.4.46, glpQ, ugpQ glycerophosphoryl diester phosphodiesterase, at 482,754 to 484,525
11723
mRNA_3356: 11724 - K19306 BUD23 18S rRNA (guanine1575-N7)-methyltransferase, at 484,974 to 486,354
11724
mRNA_3357: 11725 - BLAST dna-directed rna polymerase i subunit rpa43 [Rhod..., at 486,537 to 488,799
11725
mRNA_3358: 11726 - Hypothetical Protein, at 489,592 to 490,817
11726
Group
Condition
mRNA
_3354
mRNA
_3355
mRNA
_3356
mRNA
_3357
mRNA
_3358
11722
11723
11724
11725
11726
auxotrophy
Dropout Complete
-2.5
+0.2
N.D.
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-1.9
+0.4
N.D.
+0.1
-0.2
auxotrophy
YNB Glucose
-1.9
+0.3
N.D.
+0.1
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-1.5
+0.3
N.D.
-0.2
+0.1
growth on ypd
YPD
-1.5
-0.2
N.D.
+0.5
-0.0
growth on ricinoleic acid
YNB Glucose
-1.6
+0.5
N.D.
-0.1
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.8
+0.4
N.D.
+0.1
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.0
+0.4
N.D.
-0.0
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.8
+0.4
N.D.
-0.2
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-1.2
+0.4
N.D.
+0.4
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+2.4
-0.4
N.D.
-1.0
-1.1
growth on oleic acid
YNB Glucose
-0.8
+0.1
N.D.
+0.4
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.1
N.D.
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
+0.1
N.D.
-0.1
-0.5
growth on oleic acid
YNB Oleic Acid
+0.2
-0.1
N.D.
-0.0
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.7
+0.1
N.D.
-0.2
-0.9
ypd buoyancy
40 hrs Low Buoyancy
+0.6
-0.2
N.D.
+0.4
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.3
N.D.
+0.6
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+1.0
-0.0
N.D.
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+1.3
+0.2
N.D.
+0.5
-0.8
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+1.8
+0.1
N.D.
+0.3
-0.5
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