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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11723 and 11724 are separated by 448 nucleotides
11724 and 11725 are separated by 182 nucleotides
11725 and 11726 are separated by 792 nucleotides
11726 and 11727 are separated by 1399 nucleotides
mRNA_3355: 11723 - K01126 E3.1.4.46, glpQ, ugpQ glycerophosphoryl diester phosphodiesterase, at 482,754 to 484,525
11723
mRNA_3356: 11724 - K19306 BUD23 18S rRNA (guanine1575-N7)-methyltransferase, at 484,974 to 486,354
11724
mRNA_3357: 11725 - BLAST dna-directed rna polymerase i subunit rpa43 [Rhod..., at 486,537 to 488,799
11725
mRNA_3358: 11726 - Hypothetical Protein, at 489,592 to 490,817
11726
mRNA_3359: 11727 - Hypothetical Protein, at 492,217 to 492,797
11727
Group
Condition
mRNA
_3355
mRNA
_3356
mRNA
_3357
mRNA
_3358
mRNA
_3359
11723
11724
11725
11726
11727
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
N.D.
-1.0
-1.1
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
N.D.
-0.2
-0.9
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
N.D.
-0.1
-0.5
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
N.D.
+0.5
-0.8
-0.3
ypd buoyancy
40 hrs High Buoyancy
+0.1
N.D.
+0.1
-0.1
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
N.D.
+0.3
-0.5
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.0
N.D.
+0.1
+0.0
-0.1
growth on ypd
YPD
-0.2
N.D.
+0.5
-0.0
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.3
N.D.
-0.2
+0.1
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
N.D.
-0.0
+0.1
-0.2
auxotrophy
Dropout Complete
+0.2
N.D.
-0.1
+0.1
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
N.D.
+0.1
-0.3
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
N.D.
-0.2
-0.0
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.2
N.D.
+0.4
+0.1
-0.0
growth on oleic acid
YNB Oleic Acid
-0.1
N.D.
-0.0
+0.2
+0.3
auxotrophy
YNB Glucose
+0.3
N.D.
+0.1
+0.2
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.4
N.D.
+0.1
-0.2
+0.4
growth on ricinoleic acid
YNB Glucose
+0.5
N.D.
-0.1
+0.2
+0.2
growth on oleic acid
YNB Glucose
+0.1
N.D.
+0.4
+0.2
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
N.D.
+0.6
-0.0
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
N.D.
+0.4
+0.2
-0.1
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