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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11725 and 11726 are separated by 792 nucleotides
11726 and 11727 are separated by 1399 nucleotides
11727 and 11728 are separated by 398 nucleotides
11728 and 11729 are separated by 420 nucleotides
mRNA_3357: 11725 - BLAST dna-directed rna polymerase i subunit rpa43 [Rhod..., at 486,537 to 488,799
11725
mRNA_3358: 11726 - Hypothetical Protein, at 489,592 to 490,817
11726
mRNA_3359: 11727 - Hypothetical Protein, at 492,217 to 492,797
11727
mRNA_3360: 11728 - KOG4836 Uncharacterized conserved protein, at 493,196 to 494,520
11728
mRNA_3361: 11729 - K11247 SH3GL endophilin-A, at 494,941 to 495,602
11729
Group
Condition
mRNA
_3357
mRNA
_3358
mRNA
_3359
mRNA
_3360
mRNA
_3361
11725
11726
11727
11728
11729
ypd buoyancy
40 hrs No Buoyancy Separation
-1.0
-1.1
-0.3
-0.3
+0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.9
-0.1
-0.1
-0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
-0.8
-0.3
-0.2
-0.9
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
+0.1
-0.2
+0.1
-0.8
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.1
-0.5
-0.3
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
+0.2
-0.1
-0.6
-0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.6
-0.0
-0.0
-0.4
-0.9
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.2
+0.4
-0.3
-0.7
auxotrophy
Dropout Complete
-0.1
+0.1
+0.0
-0.4
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.3
+0.1
-0.5
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.1
+0.0
-0.1
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.5
-0.1
+0.3
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.5
-0.0
+0.2
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.0
+0.1
-0.1
-0.1
auxotrophy
YNB Glucose
+0.1
+0.2
+0.1
-0.3
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.0
-0.1
-0.0
-0.0
growth on ypd
YPD
+0.5
-0.0
-0.0
+0.1
-0.3
growth on oleic acid
YNB Oleic Acid
-0.0
+0.2
+0.3
-0.1
-0.1
growth on ricinoleic acid
YNB Glucose
-0.1
+0.2
+0.2
+0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.4
+0.1
-0.0
-0.0
+0.2
growth on oleic acid
YNB Glucose
+0.4
+0.2
+0.1
+0.2
-0.1
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